DRSC/TRiP Functional Genomics Resources

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Protein Alignment Git and arap3

DIOPT Version :10

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:XP_002933683.3 Gene:arap3 / 100492779 XenbaseID:XB-GENE-983598 Length:1805 Species:Xenopus tropicalis


Alignment Length:291 Identity:65/291 - (22%)
Similarity:108/291 - (37%) Gaps:82/291 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGN--WEPSVLNFVNS 104
            |....::|.||.|.:|.|||||..:::|..|..||||||.:||.|:||:...  |...::.....
 Frog   695 SNKSNKICADCRASNPDWASINLCVVICKQCAGVHRSLGTNISKVQSLKLDTSIWSNEIVQLFII 759

  Fly   105 LNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALH-----PTKSDFIKAKHVNLTF-VLK 163
            |....||..|...||                   |.:.||     ..:.:||..|:....: ...
 Frog   760 LGNDKANRFWAAKLL-------------------PSEMLHTDDPVERRRNFITQKYREGKYRGFH 805

  Fly   164 PSLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFG 228
            |.|.           .::|:.:.|.|:|...||..|:..|...|:             .:|...|
 Frog   806 PQLN-----------TQEEILKVLCAAVAGPNLLNSVMQLFSDAE-------------CVADAVG 846

  Fly   229 QASQIEMLLIYGAD-----VNALDGNGMTPLELARANNHNTIAERLLDAMY-------------- 274
            |.:  .||::..:|     .|:::.:.:...|..:|..::.|.:.::.:.|              
 Frog   847 QDN--AMLVVQSSDTWRASTNSINADSLGFDEANQARVYDEILQPVVHSGYLNKTAALTKLFTAR 909

  Fly   275 ----------DVTDRIITFLGGKKPDHASGR 295
                      .|.:|.:||....|.....|:
 Frog   910 KSKDEFHKHWCVLERSLTFYDSDKASEPLGK 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap_GIT 39..155 CDD:350062 36/119 (30%)
ANKYR <187..>272 CDD:440430 18/89 (20%)
ANK repeat 187..213 CDD:293786 8/25 (32%)
ANK repeat 215..247 CDD:293786 7/36 (19%)
ANK repeat 249..279 CDD:293786 5/53 (9%)
GIT_SHD 314..342 CDD:462506
GIT_SHD 374..402 CDD:462506
GIT1_C 612..731 CDD:463492
arap3XP_002933683.3 SAM_superfamily 7..66 CDD:472832
PH1_ARAP 486..577 CDD:270073
PH-like 593..676 CDD:473070
ArfGap_ARAP 687..802 CDD:350066 37/125 (30%)
PH-like 889..1001 CDD:473070 7/52 (13%)
PH-like 1014..1109 CDD:473070
RhoGAP_ARAP 1114..1292 CDD:239850
RA_ARAP3 1324..1421 CDD:340748
PH-like 1420..1539 CDD:473070
Blue background indicates that the domain is not in the aligned region.

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