DRSC/TRiP Functional Genomics Resources

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Protein Alignment Git and acap3b

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:NP_001076484.1 Gene:acap3b / 100009646 ZFINID:ZDB-GENE-070209-274 Length:846 Species:Danio rerio


Alignment Length:507 Identity:124/507 - (24%)
Similarity:166/507 - (32%) Gaps:201/507 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSIIEAHRKL----FIAPPDLDHSDPATPTIST----RSKMPRGKSRLQ-------TEVCGDCGA 54
            :||..|:|::    :|...|...| |:|.:|.:    |.::.||.|.||       .|:|.|||.
Zfish   360 ASIASAYREISENYYIERLDRTAS-PSTSSIDSASEPRERVVRGDSILQRVQCLPGNEICCDCGQ 423

  Fly    55 GDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGANSVWEHHLL 119
            .||.|||||.|||||.:|..:|||||.|.|.|:||....|||.::..:..|.....|.::|    
Zfish   424 SDPRWASINLGILLCIECSGIHRSLGVHCSKVRSLTLDTWEPELMKLMCELGNTVINQIYE---- 484

  Fly   120 DGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTF------------------------ 160
             |:....|.|      ||.|..: ...|..:||||:|...|                        
Zfish   485 -GACEEQGLK------KPGPNSS-RQEKEAWIKAKYVERKFLKKMCGSEALLEGGRKSHHWSVKK 541

  Fly   161 ----------------------------------------------------------------- 160
                                                                             
Zfish   542 CRRHNSSIRAPKTRRKYRHDAAIMSPGNLSAAAAAAKFRRESLFCPDELDSLFSYFDTGSGPRSP 606

  Fly   161 ----------------------------VLKPSLQDDDDGNGSAGCLEQELS-----RQ------ 186
                                        |.:...:|.|:.:|... :|||.|     |:      
Zfish   607 AGLSSDSGLGGSTDGSTDILVFGSVVDSVTEEECEDSDESSGEVD-IEQEASDPEDGRELDPNTL 670

  Fly   187 LHASVRTSNLETSLRFLVQGADPN-YYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVNALDGNG 250
            ||.:.|..|:......|..|||.| ...||:..:||..|...|.....|.||..|||||..|..|
Zfish   671 LHKASRARNMPVMAEALAHGADVNSVSEEDESKSPLIQAVTGGSLIACEFLLQNGADVNQRDIRG 735

  Fly   251 MTPLELARANNHNTIAERLLDAMYDVTDRIITFL---GGKKPDHASGRH--MIIPDANGADISEQ 310
            ..||..|....|              |.::..||   .|:......|:.  .|...|..|||...
Zfish   736 RGPLHHATCLGH--------------TGQVCLFLKRGAGQMEVDEDGQDPLSIAVQAANADIVTL 786

  Fly   311 LKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWSTSTLNADHATVPFLP 362
            |::||         |.||:          ||.:     ..|....|:||..|
Zfish   787 LRLAR---------MNEEM----------READ-----GPLGQPDASVPVSP 814

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 47/232 (20%)
Ank_2 187..279 CDD:289560 30/92 (33%)
ANK <187..270 CDD:238125 29/83 (35%)
ANK repeat 187..213 CDD:293786 9/26 (35%)
ANK repeat 215..247 CDD:293786 13/31 (42%)
ANK repeat 249..279 CDD:293786 6/29 (21%)
GIT_SHD 314..342 CDD:285690 6/27 (22%)
GIT 374..404 CDD:128828
GIT1_C 609..727 CDD:289013
acap3bNP_001076484.1 BAR_ACAP3 16..215 CDD:153321
PH 269..363 CDD:278594 1/2 (50%)
PH_ACAP 271..367 CDD:270070 3/6 (50%)
ArfGap 403..520 CDD:279720 50/128 (39%)
ANK repeat 666..697 CDD:293786 9/30 (30%)
ANK 668..787 CDD:238125 39/132 (30%)
Ank_2 671..759 CDD:289560 32/101 (32%)
ANK repeat 699..732 CDD:293786 14/32 (44%)
ANK repeat 734..759 CDD:293786 8/38 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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