DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Git and LOC100005008

DIOPT Version :9

Sequence 1:NP_610599.3 Gene:Git / 36122 FlyBaseID:FBgn0033539 Length:731 Species:Drosophila melanogaster
Sequence 2:XP_001344168.4 Gene:LOC100005008 / 100005008 -ID:- Length:958 Species:Danio rerio


Alignment Length:738 Identity:154/738 - (20%)
Similarity:237/738 - (32%) Gaps:270/738 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 EVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGN--W-EPSVLNFVNSLNAH 108
            :||.||||.:|.|||:|..:::|..|...|||:|...|.|:.|:..:  | ||.:..||    .|
Zfish   399 KVCADCGAANPEWASVNLLVVICEACAGAHRSMGSSRSKVRGLKLDDKVWTEPLIQLFV----LH 459

  Fly   109 G---ANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHP-----TKSDFIKAK-HVNLTFVLKP 164
            |   ||:||.|::                   .|.:.:.|     .:::||.|| |..|.....|
Zfish   460 GNKTANNVWGHNI-------------------PPTEQISPLASPDQRAEFILAKYHKGLYRKAHP 505

  Fly   165 SLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHED-KLSTPLHMAAKFG 228
                       ....::.|.::|...|....:|.::..|..||..:....| :|.:.:.:|...|
Zfish   506 -----------LAASQKLLDQRLREVVCGPAVEETVSLLCSGAKVSCSSSDPELKSAIAVAESAG 559

  Fly   229 QASQIEMLLIYGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHAS 293
            ||.|.|:|                        .||...|                    .||...
Zfish   560 QALQTELL------------------------RHNEFVE--------------------APDFEQ 580

  Fly   294 GRHMIIPDANGADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAI----------WST 348
            .||.          .||::...|||........:|.....||.:|..|..::          :..
Zfish   581 TRHS----------EEQMEELHGKLDEERFLFSQENQSAAYDVLDLTEVVSVFDCSDGETHQFEV 635

  Fly   349 STLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANLRPMDAPV 413
            ||| .|..|......|..||                ..|.::..||.|.:::.:           
Zfish   636 STL-TDRLTCSADERNALLS----------------HMTHIMKVVLADTVKQDD----------- 672

  Fly   414 AGHQSLQSLPYANNSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSA 478
                            |||.|...    .||..|      .:...:|.|....|:          
Zfish   673 ----------------LLGVFAVS----KLSIRE------GAALQFAEVWCSLQE---------- 701

  Fly   479 NSHNEMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDLSLSSPDT 543
               .||.....||...::.|...:....:.||||..|                      |..||.
Zfish   702 ---GEMSVHTLQLRSRETLILNAQTRCYLQSSENCIL----------------------LEFPDR 741

  Fly   544 E--------------HEPLSLPEGGTANGE--SGSSNDSSNQ--STIKRPASMYE---RR--LVP 585
            .              ||.|......:.:|:  :||...|.::  |.|.....|.|   ||  :.|
Zfish   742 TFHMQFELEHSCRRWHELLQKAMSSSTDGQQRAGSVPTSVHRCISHITLHGLMVEGLYRRCGIAP 806

  Fly   586 NVAKGNTDIRNTTSMYQMAGDGKPFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPH---- 646
            .::|....:|.:.....:..|      |:.|..  |:..||:::|..:.:|:..:    ||    
Zfish   807 QISKLVDTLRVSPKEAVLQTD------ELSVLD--VSGALKQILRQSELIPQTHR----PHWQNA 859

  Fly   647 ----GELIRSAVTDLIALYANLPPNASDPSRETLKLLTRQNI-LIQHECENLQKAIEADDKQAIQ 706
                ||.:|      :..|           ||.||.|...|| .:...|.:|..         :|
Zfish   860 AALPGEKVR------LQTY-----------RELLKQLPPDNIATLSALCAHLNN---------VQ 898

  Fly   707 KNTLEVRDCAFHIASAIKTLVLQ 729
            |::...|..|.::|.....:..|
Zfish   899 KHSQTNRMTAHNLAVIFVVIFFQ 921

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GitNP_610599.3 ArfGap 48..164 CDD:279720 40/127 (31%)
Ank_2 187..279 CDD:289560 18/92 (20%)
ANK <187..270 CDD:238125 18/83 (22%)
ANK repeat 187..213 CDD:293786 6/25 (24%)
ANK repeat 215..247 CDD:293786 9/32 (28%)
ANK repeat 249..279 CDD:293786 3/29 (10%)
GIT_SHD 314..342 CDD:285690 7/27 (26%)
GIT 374..404 CDD:128828 4/29 (14%)
GIT1_C 609..727 CDD:289013 27/126 (21%)
LOC100005008XP_001344168.4 PH-like 291..375 CDD:302622
PH 292..380 CDD:278594
ArfGap 386..503 CDD:279720 40/126 (32%)
RhoGAP 769..939 CDD:295372 42/191 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.