DRSC/TRiP Functional Genomics Resources

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Protein Alignment psq and Nacc2

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_001032175.1 Gene:Nacc2 / 67991 MGIID:1915241 Length:586 Species:Mus musculus


Alignment Length:598 Identity:117/598 - (19%)
Similarity:205/598 - (34%) Gaps:146/598 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 NYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHPTIILPADI 80
            |:.||:.....:.|....:.||::..:..:.|||:.||:|.|.||:.|...|  ......||..:
Mouse    11 NFGNTVLGCLNEQRLLGLYCDVSIVVKGQAFKAHRAVLAASSLYFRDLFSGN--SKSAFELPGTV 73

  Fly    81 IFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLN--------DAATATI 137
            .....:.|:.|.|.|::.:..||...::.||..|:|:.:   .|...||.        |:.||.|
Mouse    74 PPACFQQILSFCYTGKLTMAASEQLVVMYTAGFLQIQHI---VERGTDLMFKVSSPHCDSQTAMI 135

  Fly   138 TVSENIQQAVVGNI--VNAAIV--PGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQ 198
            ..:.:..|:....:  ..||.|  |..|.|.|.:.:  |:..:...|    ....:.:::..:..
Mouse   136 EDASSEPQSPCNQLQPATAAYVTSPSVPIPLLTRVK--HEAMEMPPA----SGPGLASKRPLETG 194

  Fly   199 QQINAALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTPRKSRLKRSKSP- 262
            .:...|:.|....:.|:..|....:|.....|..:|....|....|.|.:.:|..|.|..:.|| 
Mouse   195 PRDGVAVATGAAGTPGTAPLKLPRVSYYGVPSLATLIPSIQQVPYPPGERTSPGASSLPTTDSPT 259

  Fly   263 --------------DLSSGGGAGSSGGSSSG--STQQQPQPAHHHHPQTILIQGQ---NPNSIVS 308
                          |.......|.....::|  :.|::|:|........:||:..   .|.|::|
Mouse   260 SYHNEEDEEDDEAYDTMVEEQYGQMYIKATGNYAVQEKPEPVPLESRSCVLIRRDLVALPASLIS 324

  Fly   309 LQQTADGNYIPVSGSGDDSDAEDHEHEHNHGHG----HGHGGHTHGHGHSHEHSHDHEHEHKPNK 369
              |.....:..:...||..:    :.|...|.|    .|...:.|                    
Mouse   325 --QIGYRCHPKLYSEGDPGE----KLELVAGSGVYITRGQLMNCH-------------------- 363

  Fly   370 ICK-TEHSV------ASPASNSSSASNNAAGVSGVTS------TGQAIVTQI------------- 408
            :|. .:|.|      |:....::.|::...|:...||      ....::..:             
Mouse   364 LCAGVKHKVLLRRLLATFFDRNTLANSCGTGIRSSTSDPSRKPLDSRVLNAVKLYCQNFAPSFKE 428

  Fly   409 ----VVARDG------------KDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPV---- 453
                |:|.|.            ...|:|...|:.|...::|.....|...||  .|||.|.    
Mouse   429 SEMNVIAADMCTNARRVRKRWLPKIKSMLPEGVEMYRSVMGASAASLPLDPE--FPSAAPQVFEQ 491

  Fly   454 -----------------TVTEHVDL--SCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQSPMHS 499
                             |...:|||  |.||:.:      ..|.:|....:.|::...:|.|...
Mouse   492 RIYAERRSDAATIVALRTDAVNVDLSTSANPAFE------ANEEVDGGGSVIQEVAAPEQLPADG 550

  Fly   500 ISHHHTGDESNSN 512
            .|.....::.|::
Mouse   551 QSSPQAFEQGNTS 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 25/83 (30%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
Nacc2NP_001032175.1 BTB_POZ_BTBD14A_NAC2 1..131 CDD:349598 33/124 (27%)
Prog_receptor <139..241 CDD:366948 18/107 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 177..196 1/22 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..272 7/35 (20%)
BEN 371..448 CDD:214981 9/76 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..586 4/22 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 73 1.000 Inparanoid score I5272
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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