DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment psq and mod(mdg4)

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_788698.1 Gene:mod(mdg4) / 49228 FlyBaseID:FBgn0002781 Length:610 Species:Drosophila melanogaster


Alignment Length:438 Identity:110/438 - (25%)
Similarity:178/438 - (40%) Gaps:101/438 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QYFSLRWNNYQNTMTSVFQQ--LREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCK 70
            :.|||.|||:...:::.|.:  .|.||  |||:|:.|...:|||::|||.||.:|:|:..:.|..
  Fly     5 EQFSLCWNNFNTNLSAGFHESLCRGDL--VDVSLAAEGQIVKAHRLVLSVCSPFFRKMFTQMPSN 67

  Fly    71 HPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATA 135
            ...|:...::..:.||.:|.|:|.||::|.:..|...:.|||.|:||||.:        ||.|  
  Fly    68 THAIVFLNNVSHSALKDLIQFMYCGEVNVKQDALPAFISTAESLQIKGLTD--------NDPA-- 122

  Fly   136 TITVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQE-QHQQQQVHAQ------- 192
                                  |..|..|.......|.||||..||. |.||.:..|:       
  Fly   123 ----------------------PQPPQESSPPPAAPHVQQQQIPAQRVQRQQPRASARYKIETVD 165

  Fly   193 ----QQQQQQQQI--------NAALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPS 245
                .::|...||        .|.::.|......:..:..|.|.:..: ::.:|....:.|...|
  Fly   166 DGLGDEKQSTTQIVIQTTAAPQATIVQQQQPQQAAQQIQSQQLQTGTT-TTATLVSTNKRSAQRS 229

  Fly   246 GLQPTPRKSRLKRSKSPDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSL- 309
            .|.|....:.:||||:...::......|...:..:|..|..      ||.|.:|    .|:||. 
  Fly   230 SLTPASSSAGVKRSKTSTSANVMDPLDSTTETGATTTAQLV------PQQITVQ----TSVVSAA 284

  Fly   310 -----QQT------ADGNYIPVSGSGDDSDAEDHEHEHNHGHGHGHGGH----THGHGHSHEHSH 359
                 ||:      .:..||.:..........|:..:|....|...|.:    |:| ...::.|:
  Fly   285 EAKLHQQSPQQVRQEEAEYIDLPMELPTKSEPDYSEDHGDAAGDAEGTYVEDDTYG-DMRYDDSY 348

  Fly   360 DHEHEHKPNKICKTEHSVASPASNSSSASNNAAGVSGVTSTGQAIVTQ 407
            ..|:|               .|.|.::|:.:..||:..||  :|:|.|
  Fly   349 FTENE---------------DAGNQTAANTSGGGVTATTS--KAVVKQ 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 31/83 (37%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
mod(mdg4)NP_788698.1 BTB 22..118 CDD:279045 38/97 (39%)
BTB 33..118 CDD:197585 33/84 (39%)
FLYWCH 452..512 CDD:282369
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.010

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