DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment psq and CG15812

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_523897.2 Gene:CG15812 / 38379 FlyBaseID:FBgn0035405 Length:518 Species:Drosophila melanogaster


Alignment Length:612 Identity:117/612 - (19%)
Similarity:210/612 - (34%) Gaps:161/612 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHG-SLKAHKVVLSACSTYFQKLLLENP-CKHPTI 74
            |:|..:.:|:..:.:.||.|....:|.|:...| .::||..|||.||...:.||::.| .:..||
  Fly     4 LKWMGHSSTIMDIQRSLRNDNQHCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATI 68

  Fly    75 ILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATITV 139
            :|| ||....|:.::.|:|.||..:..:.|...|.....|.||...     :.:.|.:|:.....
  Fly    69 MLP-DIRGDLLECMLSFIYMGETSLPSASLPEFLEAINLLGIKSAI-----SFECNPSASPPSVD 127

  Fly   140 SENIQQAVVGNIVNAAIVPG---APSPSLEQQQQHHQQ---QQQQQAQEQHQQQQVHAQQQQQ-- 196
            .||...||    .:|..:.|   |.:..|:.:::.|..   .....|..|||..  |:.:..:  
  Fly   128 VENHSLAV----ESAKSITGLQIAEAELLDDEEEPHPMVSVPATTLAGSQHQPS--HSSRSLEYI 186

  Fly   197 ---QQQQINAALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTPRKSRLKR 258
               :..:|..::....|.|||:     |.:.:..:|:                ...|...|.|.:
  Fly   187 DVYEPPKITYSIEHMDGSSSGN-----QFILTENTGT----------------FTITQSASSLSK 230

  Fly   259 SKSPDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGS 323
            .::.:..:.|.....|.....:  ...:.:..|..|.|..:....:.::.|:            :
  Fly   231 IEADETGTSGAEVDLGDDDVDA--DLAEDSEEHESQMIDEEFAQADPLMELE------------A 281

  Fly   324 GDDSDAEDHEHEHNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVASPASNSSSAS 388
            |.:.|.:|                     ..|:...|.|.:.||.|:...:..:..|.|      
  Fly   282 GTEMDDDD---------------------DVHDQLVDEEIDDKPRKLGGGKTRIRRPIS------ 319

  Fly   389 NNAAGVSGVTSTGQAIVTQI-VVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATP 452
              |..|..::......:.|. .:.|:.||..|                 ..||.        |..
  Fly   320 --AKAVKRLSDCKPTRIQQFAALKREVKDDIN-----------------DALDL--------AAD 357

  Fly   453 VTVTEHVDLSCNPSTDTRDLSNT-------TEPLDIDNH-----LAQQIHRLD------------ 493
            ..:.|  .||...:.|..|:|.|       |.|..:.|:     |.:...||.            
  Fly   358 AVIIE--GLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLQEAYERLKNGHSLKSISSEL 420

  Fly   494 QSPMHSISHHHTGDESNSNLVQHIK--------SEVIEAKHLAAQHHALSQAQQQHAHHQAH--- 547
            |.||.::..|.....:...|...:.        .:.:..|...|.|..|::...|  :|.|:   
  Fly   421 QIPMSTLHRHKVRLSAQGRLPNFVSCRKRDNTPKDELRDKLAKAVHACLNEGMSQ--NHAANLFE 483

  Fly   548 -------QQHQQHQQQQHQQQQQHLHA 567
                   :..|:....|:::.::.|.|
  Fly   484 IPKSTLWRHLQRRTTSQNKKVKKELKA 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 28/85 (33%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
CG15812NP_523897.2 BTB 20..113 CDD:279045 32/93 (34%)
BTB 35..118 CDD:197585 27/88 (31%)
HTH_psq 348..392 CDD:283007 13/70 (19%)
HTH_psq 458..501 CDD:283007 8/44 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.020

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