DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment psq and bab1

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_728565.1 Gene:bab1 / 38116 FlyBaseID:FBgn0004870 Length:977 Species:Drosophila melanogaster


Alignment Length:1246 Identity:263/1246 - (21%)
Similarity:397/1246 - (31%) Gaps:521/1246 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72
            |.|.|||||||..:|::|.||.::..||||||:|:..|:||||:||||||.|||.||.|.||:||
  Fly   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLLAETPCQHP 164

  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCETAENADDLNDAATATI 137
            .:|: .|:.::|||.|::|:|||||:|::.::..|||.||.||::||.:...     .:||||..
  Fly   165 IVIM-RDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADVTH-----MEAATAAA 223

  Fly   138 TVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQIN 202
            ..:.:.:            :|.:|..|....:..|.:::        :.:::.|..|.:::.   
  Fly   224 AAASSER------------MPSSPKESTSTSRTEHDRER--------EAEELLAFMQPEKKL--- 265

  Fly   203 AALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTP------RKSRLKRSKS 261
                                               :.:...|:.|:.:|      |..|.:|..|
  Fly   266 -----------------------------------RTSDWDPAELRLSPLERQQGRNVRKRRWPS 295

  Fly   262 PDLSSGGGAGSSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQTADGNYIPVSGSGDD 326
            .|                               ||......|:.:.||.            :.:.
  Fly   296 AD-------------------------------TIFNPPAPPSPLSSLI------------AAER 317

  Fly   327 SDAEDHEHEHNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVASPASNSSSASNNA 391
            .:.|..|.|..                                                      
  Fly   318 MELEQKERERQ------------------------------------------------------ 328

  Fly   392 AGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVT 456
                                   :|...||.                   .|:||..|.:.|..|
  Fly   329 -----------------------RDCSLMTP-------------------PPKPPMSSGSTVGAT 351

  Fly   457 EHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQ-SPMHSISHHHTGDESNSNLVQHIKSE 520
            ..::.:                          ||.||. ||                        
  Fly   352 RRLETA--------------------------IHALDMPSP------------------------ 366

  Fly   521 VIEAKHLAAQHHALSQAQQQHAHHQAHQQHQQHQQQQHQQQQQ---------HLHAQQLLAQSQL 576
                   ||....||::.:.|:        |..||||.|||.|         |.||......||.
  Fly   367 -------AATPGPLSRSSRPHS--------QSPQQQQAQQQGQLPLPLPLHPHHHASPAPHPSQT 416

  Fly   577 QQQQQQQQQQQQHHQQQQQQAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIIT 641
            ..............:.....|||.|||..:.|...|                ||.   ||.:...
  Fly   417 AGSAHHPASPAGDSRFPLGPAAAMAAARELSGLGPG----------------PSA---EPRLPPP 462

  Fly   642 PEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGSVCGPGPGGAGGGGG 706
            |                                   ||:      ||      |.|.||.|.|||
  Fly   463 P-----------------------------------PHH------HG------GGGVGGGGVGGG 480

  Fly   707 MSGGAGSGSGEKALDAL-------------------KNQNMSL-----TKASAIYGIPSTTLWQR 747
            .:||.|||.|....|.|                   :|.:..:     |.|:..|.....::||:
  Fly   481 GAGGVGSGGGSSLADDLEIKPGIAEMIREEERAKMMENSHAWMGATGSTLAADSYQYQLQSMWQK 545

  Fly   748 A--------HRMGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARR 804
            .        |.|..   ::.|..|||..:.:..|:.::....:|.::|::.:.||..|....|.|
  Fly   546 CWNTNQNLMHHMRF---RERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANR 607

  Fly   805 EGIRLAAPFNAAPT---------------TWTPEDLERALEAIRAGNT-SVQKASAEFGIPTGTL 853
            ....|....:..|.               .|..|.::..::.:...:| .::..|....:|.   
  Fly   608 VHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDTKDIKDESLAAHMPP--- 669

  Fly   854 YGR----CKREGIELSRSNPTPWSEDAMNEALNSVR-------------VGQMSINQ------AA 895
            |||    ...:.:.||    .|.:..|:..|.:|:.             .|:..::|      ||
  Fly   670 YGRHSPAFPLQDLPLS----YPGASGALAGAPSSMACPNGSGPQTGVGVAGEQHMSQETAAAVAA 730

  Fly   896 IHYNLPYSSLYGRFKRGKYDV---------VANTSGVALLNTSGNTTGSIEIIEHSQENSQQFPY 951
            :.:|:...........|.:::         |.|..|.|         |....|..:..:.....:
  Fly   731 VAHNIRQQMQMAAVPPGLFNLPPHPGVGGGVGNVPGAA---------GGRASISPALSSGSGPRH 786

  Fly   952 SPSPHPPT------PQHHSTPQHHSSAQQGPPTPQHMQQ--------HVVHMQQQQQQQQQQSPH 1002
            :|||..|.      |...:...||...||.  ...||||        |:.|.||||||||||...
  Fly   787 APSPCGPAGLLPNLPPSMAVALHHQQQQQA--AHHHMQQLHLQQQQAHLHHHQQQQQQQQQQHHQ 849

  Fly  1003 PGHHPQHMQQDVVTSSSQVVHSQQQQQLQQIYQHH-----GTPERS-XESLHA------------ 1049
            .||...|......:|||....|       .:.|||     .:|.||  ..||:            
  Fly   850 GGHQVAHKSGFGASSSSSASSS-------SMGQHHAPKAKSSPLRSETPRLHSPLGDLGLDMASY 907

  Fly  1050 --------------ATLMGSTGGGGGGGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPV 1100
                          |.|:|::          |::|:|...||::.|..|..| .|..:.|..|  
  Fly   908 KREFSPSRLFAEDLAELVGAS----------VSSSSSSAAAATAPPERSAGA-ASAATGADAP-- 959

  Fly  1101 TASGSSAVSGG 1111
                ||:.|||
  Fly   960 ----SSSSSGG 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 48/83 (58%)
HTH_psq 717..>747 CDD:283007 7/53 (13%)
HTH_psq 767..804 CDD:283007 7/36 (19%)
HTH_psq 821..866 CDD:283007 8/49 (16%)
HTH_psq 873..916 CDD:283007 9/61 (15%)
bab1NP_728565.1 BTB 117..216 CDD:279045 53/104 (51%)
BTB 128..213 CDD:197585 48/85 (56%)
HTH_psq 569..614 CDD:283007 9/44 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.100

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