DRSC/TRiP Functional Genomics Resources

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Protein Alignment psq and chinmo

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_001188680.1 Gene:chinmo / 33343 FlyBaseID:FBgn0086758 Length:840 Species:Drosophila melanogaster


Alignment Length:907 Identity:184/907 - (20%)
Similarity:301/907 - (33%) Gaps:331/907 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLLLENPCKHP 72
            |.|.|:||::.:.:...|..|.:.....||.|||:....||||::|:|||..|..|....|....
  Fly     5 QQFCLKWNSFSSNLAITFSNLFKSDLLADVILSCDGVVFKAHKLILAACSKKFADLFENTPTNGQ 69

  Fly    73 TIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLC---------ETAENADD 128
            .:|:.......::..:::|:|:||:.|::..|...|::||.|::|||.         :..::..|
  Fly    70 CVIILEATTPDNMAALLEFMYKGEVHVSQEALNSFLKSAESLQVKGLSTETGRLAAQQAQQHMGD 134

  Fly   129 LN--DAATATITVSENIQQAVVGNIVNAAIVPGAPSPSLEQQQQHHQQQQQQQAQEQHQQQQVHA 191
            |:  |:.|...:|..::...      :::||||.....|                          
  Fly   135 LSPLDSPTGRRSVRNSLSGG------SSSIVPGGVGIGL-------------------------- 167

  Fly   192 QQQQQQQQQINAALLTQHGVSSGSVSLSGQLLSSSASGSSGSLAGG---QQASQTPSGLQPTPRK 253
                             .|.::|:.|:||..:.:..| .:|..|||   ..|:...|.|......
  Fly   168 -----------------GGGATGANSMSGMGIGNGLS-LAGMAAGGGMAAAANAAASSLSTLAAS 214

  Fly   254 SRLK---RSKSPDLSSGGGAG----SSGGSSSGSTQQQPQPAHHHHPQTILIQGQNPNSIVSLQQ 311
            :.:.   .|...::.||..||    .|||:.:||             .|:.|.|....|      
  Fly   215 ANIVDRCGSAGANIISGSAAGIGGSHSGGAGNGS-------------GTVGIGGNGVGS------ 260

  Fly   312 TADGNYIPVS-GSGDDSDAEDHEHEHNHGHGHGHGGHT-------------------HGHGHSH- 355
             ..||..|:| |||             .|..|..||.|                   .|.|::| 
  Fly   261 -GGGNNGPISLGSG-------------AGAAHHLGGSTGILKQECDSLMHPGGSSSSSGMGYTHV 311

  Fly   356 -----------------EHSHDHEHE------------------------HKPNKICK------- 372
                             ..|...|.|                        |:|:....       
  Fly   312 PPIYRPINYEPPRKRAIVRSPYSEQEQRGSVLRDGSKSSECPSPINKPPYHRPSSSASSTAPTEA 376

  Fly   373 -TEHSV-ASPASN--SSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGM------ 427
             |.||. |||.|:  .:.:.:..||....||:.:.||         |..:|..|.....      
  Fly   377 DTMHSERASPQSSRYENHSPSTTAGNGNATSSLERIV---------KSERNNGSANEANDDDREL 432

  Fly   428 ------NGGL-LGVPMGFLDFTPEPP----APSATPVTVTEHV----DLSCN--PSTDTRDLSNT 475
                  ||.. |.|.:..|.::|.||    ..|.||.|:.|::    .||.|  .|....|:.|.
  Fly   433 MDESTDNGAEDLRVKLENLKYSPPPPPNSNTSSTTPNTLLENLKADGTLSSNLAASIAPADMLNV 497

  Fly   476 TEPLDIDNH--------------LAQQIHRLDQSPMHSISHHHTGDE-----------SNSNLVQ 515
            .....::|.              ...:::..:.:....|...|.|..           .|:.:.:
  Fly   498 WNATKMNNKNSVNTADGKKLKCLYCDRLYGYETNLRAHIRQRHQGIRVPCPFCERTFTRNNTVRR 562

  Fly   516 HI----KSEV-------IEAKHL------------AAQHHALSQAQQ-------QHAHHQAHQQH 550
            ||    |.|:       |...||            ||.:|:. :|..       .:|:.:|.:|.
  Fly   563 HIAREHKQEIGLAAGATIAPAHLAAAAAASAAATAAASNHSPXEAAATAAASVVMNANKEAAKQR 627

  Fly   551 QQH----QQQQHQQQQQHLHAQQLL-------------------------AQSQLQQQQQQQQQQ 586
            ::.    ..::..|::..:.|:...                         |.|:..:....:|||
  Fly   628 KRKTLKMALEKCMQRRDAMVAETTTGAGGDGAEAGGESGEAVDGAGSEEGAGSEGTEPLTYEQQQ 692

  Fly   587 QQHHQQQQQQAAAAAAA------------------------AGVHG--QHGGHVTHADIGGATVM 625
            |:.||:..||..||.||                        ....|  ..|.....|..|....|
  Fly   693 QRMHQELTQQIRAAMAAEQAAEAMDSTMNTTVNTTTTTTTTTNTTGATSDGCSDAEASDGSDRPM 757

  Fly   626 EIDPSQ-IKHEPG---MIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNL 683
            |:|..| .:.:||   :::.|:| .::|       .|:..||.:.::...|..|.|..|.::
  Fly   758 EVDEDQPPEPQPGSELVVVEPKI-EVLS-------ESEDEEDRLHMSEAEPDIQAEAIYDHM 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 27/83 (33%)
HTH_psq 717..>747 CDD:283007
HTH_psq 767..804 CDD:283007
HTH_psq 821..866 CDD:283007
HTH_psq 873..916 CDD:283007
chinmoNP_001188680.1 BTB 22..116 CDD:279045 30/93 (32%)
BTB 33..116 CDD:197585 28/82 (34%)
C2H2 Zn finger 519..540 CDD:275368 1/20 (5%)
C2H2 Zn finger 547..568 CDD:275368 3/20 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 68 1.000 Domainoid score I9675
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8160
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1229475at2759
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.970

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