DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment psq and mamo

DIOPT Version :9

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster


Alignment Length:1453 Identity:289/1453 - (19%)
Similarity:468/1453 - (32%) Gaps:498/1453 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHG-SLKAHKVVLSACSTYFQKLLLENPC 69
            |.:::.|||||||:.:..||.||.:|.|.|||||.|..| |::||||||||||:|||.|.||:|.
  Fly     2 GSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPE 66

  Fly    70 KHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCE------------- 121
            .|..:|| .|:.|.:|:|:::|:|:||::|...:|..||:|||.||:|||.|             
  Fly    67 GHLIVIL-KDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPER 130

  Fly   122 ---------------TAENADD----------LNDAATATITVSENIQQAVVGNIVNAAIVPGAP 161
                           :|..|.|          ...|||||.|.:.....:...:..:||....|.
  Fly   131 EPDRLRPQGGGGSGGSAHKAADSPAAALDATAATQAATATATATAAAATSTSTSATSAAATAAAT 195

  Fly   162 SPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQINAALLTQHGVSSGSV---------- 216
            :.:         .............................||..|....||.||          
  Fly   196 AAT---------SASTTATAAAGSSNTTTTTAATTTATCATAATSTAATSSSSSVTSAAAAAAAA 251

  Fly   217 -SLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTPRKSRLKRSKSPDLSSGGGAGSSGGSSSGS 280
             |.||...|..|:.||.|..|.::.:...|...|..|.||:..:...|::.             .
  Fly   252 ASASGVAHSEEATSSSSSTGGQKREASDRSSPTPAKRSSRMHPADKVDVAE-------------D 303

  Fly   281 TQQQPQPAHHHHPQTIL---IQGQNPNSIVSLQQTADGNYIPVSGSGDDSDAEDHEHE------- 335
            .:|:...|.....:.:|   ::.:..:.:..|.:..:   ..:.|..:|.|.||.|.:       
  Fly   304 REQEQNQADELLSEELLGRNLKDEEDDDVDELDENEE---TKLRGRDEDDDDEDEEEDTPMPLDL 365

  Fly   336 ---------------------HNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVAS 379
                                 .|...|..:..||:...:|:.:::::.:....|.          
  Fly   366 YQRPNVEPKSAAAATAAQQGGSNSLSGSSNACHTNSSSNSNNNNNNNNNSSSNNN---------- 420

  Fly   380 PASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPE 444
              :|:||...:|:...|..|:|....:.:.|..|..|.          :||              
  Fly   421 --NNTSSGKTSASSNGGTASSGGTADSVVAVDDDDDDD----------DGG-------------- 459

  Fly   445 PPAPSATPVTVTEHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDES 509
                                                                     |||.....
  Fly   460 ---------------------------------------------------------HHHQRQVM 467

  Fly   510 NSNLVQHIKSEVIE----------------AKHLAAQ-----HHALSQAQQQHAHHQAHQQHQQH 553
            :..|.|.:..|.::                |:.||.|     ||....||.||:.|  |..|.||
  Fly   468 DDRLEQDVDEEDLDDDVVVVGPATAMARGIAQRLAHQNLQRLHHTHHHAQHQHSQH--HHPHSQH 530

  Fly   554 QQQQHQQQQQHLH-----AQQLLAQSQLQQQQQQQQQQQQHHQQQQQQA--AAAAAAAGVHGQHG 611
            ....| .||.|.|     |..::|:|::.......:...:...:....:  .......|..|..|
  Fly   531 HHTPH-HQQHHTHSDDEDAMPVIAKSEILDDDYDDEMDLEDDDEADNSSNDLGLNMKMGSGGAGG 594

  Fly   612 GHVTHADIGGATVMEIDPSQIKHEPGMIITPE-IVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQ 675
            |       ||     :|.|     .|..:.|. ::.:.||          |..:...|..:...|
  Fly   595 G-------GG-----VDLS-----TGSTLIPSPLITLPSS----------SAAAAAAAAAAMESQ 632

  Fly   676 KEPHYTNLDQQHGLGGSVCGPGPGGAGG---------GGGMSGGAGSGSG--------------- 716
            :.....:..|..|.|.|  ....||.||         |||..||.|..|.               
  Fly   633 RSTPAMSAAQAAGAGAS--DLSIGGCGGRPASRSSRDGGGNDGGRGGASSSSLLSPGTVANLLPV 695

  Fly   717 -------EKALDALKNQNMSLTK------ASAIYGIPSTTLWQRAHRMGIETPKKEGGTKSWNED 768
                   :|.:|..::.|.|.::      |||..|:.....::.:|                 |.
  Fly   696 QSVPLSLKKEIDCSEDDNSSHSRHMQQRSASAGGGLGGDLDYRASH-----------------ES 743

  Fly   769 ALQNALEALRSGQISANKASKA---FGIPSS----TLYKI-------------------ARREGI 807
            .|:|.     |..:||..||:.   |..|.|    :|:.|                   .|..|:
  Fly   744 LLRNF-----SSPMSAMAASRCPTPFAFPFSPLGLSLFDIDPSRILSLLHHQTWLAEEALRTRGL 803

  Fly   808 RLA------------------------APFNAAPTTWTPEDLERALEAIRAGNTSVQK------- 841
            ..|                        .|...|..|.|.......:.|.|:|:|...|       
  Fly   804 LTAPKDFPHRFTTLSDLLTKDYQPGAGQPMVTATATATTASSTSQVSASRSGDTQYNKHAQQPQQ 868

  Fly   842 -------------------ASAEFGI--PTGTLYGRCKREGIELSRSNPTP----------WSED 875
                               |.|.|.:  ||.|.:.:.:::..:.::|:|:|          .|.|
  Fly   869 PQTGGATGSGVGGLGGSPTAGASFNLRYPTPTAFYQQQQQQGKGAKSSPSPQQMATSSTTVMSND 933

  Fly   876 AMNEAL-------NSVRVGQMSINQAAIHYNLPYSSLYGRFKR---------------GKYDVVA 918
            :..::.       :.|.:.::...::|..|......|..|.:|               |...|:.
  Fly   934 SGEDSCKRSSADSDEVTIMELPSERSAQLYKESLEQLLQRQRRTPILAGSGSGSGSGTGSGSVIV 998

  Fly   919 NTSGV----ALLNTSGNTTGSIEIIEHSQENSQQFPYSPSPHPP-----------TPQHHSTPQH 968
            :.:|:    .||.....:.|:.::.|.|..:      |.|..||           :|....:...
  Fly   999 DAAGLRQYTQLLLAGAGSGGASDLKEKSSSS------STSSTPPLLTQQLSQMLKSPSDTCSSLF 1057

  Fly   969 HSS----AQQGPP-TPQHMQQ---------HVVHMQQQQQQQQQQSPH--PGHHP----QHMQQD 1013
            .||    ...||. |.:.:::         |..::...:|....|.||  ||...    :...|.
  Fly  1058 SSSGGGTGSTGPGITGETIEEETRCVVCNAHFPNVWLLEQHAALQHPHVGPGEEKPFICEQCGQS 1122

  Fly  1014 VVTSSSQVVHSQQQQQ--------------------LQQIYQHHGTPERSXESLHAATLMGSTG- 1057
            ....|:...|.:|..:                    |:...:|.  ...:.|.||....:|..| 
  Fly  1123 YRYRSAYAKHKEQNHRARLPADKLFTCDVCGMQFRYLKSFKKHR--LNHALERLHGKKSVGVIGR 1185

  Fly  1058 -GGGGGGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPVTASGSSAVSGGTSKRKKANKQ 1121
             ||.|.|....|.|.|.....|.:...|::::.....::...|:.|.....:.....:...|::|
  Fly  1186 LGGSGSGPSSSAISVSVAAPTSVSASGSVTSVDQDVVTSSQEPMLADEGEDLRVNVKREGTADEQ 1250

  Fly  1122 KRXEQEDD-QPHRELETI--AGV 1141
            ....:.:| :.|.:..|:  ||:
  Fly  1251 SAESRANDLEEHEQDNTVDSAGI 1273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 45/84 (54%)
HTH_psq 717..>747 CDD:283007 8/35 (23%)
HTH_psq 767..804 CDD:283007 13/62 (21%)
HTH_psq 821..866 CDD:283007 12/72 (17%)
HTH_psq 873..916 CDD:283007 9/64 (14%)
mamoNP_572932.2 BTB 21..118 CDD:279045 53/97 (55%)
BTB 32..118 CDD:197585 47/86 (55%)
C2H2 Zn finger 1082..1105 CDD:275368 3/22 (14%)
C2H2 Zn finger 1116..1137 CDD:275368 4/20 (20%)
C2H2 Zn finger 1149..1169 CDD:275368 2/21 (10%)
zf-C2H2 1469..1491 CDD:278523
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:290200
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:290200
C2H2 Zn finger 1527..1547 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 59 1.000 Domainoid score I10615
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000141
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23110
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.100

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