DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment psq and mamo

DIOPT Version :10

Sequence 1:NP_001369078.1 Gene:psq / 36118 FlyBaseID:FBgn0263102 Length:1170 Species:Drosophila melanogaster
Sequence 2:NP_572932.2 Gene:mamo / 32353 FlyBaseID:FBgn0267033 Length:1553 Species:Drosophila melanogaster


Alignment Length:1453 Identity:289/1453 - (19%)
Similarity:468/1453 - (32%) Gaps:498/1453 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 GHQYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHG-SLKAHKVVLSACSTYFQKLLLENPC 69
            |.:::.|||||||:.:..||.||.:|.|.|||||.|..| |::||||||||||:|||.|.||:|.
  Fly     2 GSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLEHPE 66

  Fly    70 KHPTIILPADIIFTDLKTIIDFVYRGEIDVTESELQGLLRTAEQLKIKGLCE------------- 121
            .|..:|| .|:.|.:|:|:::|:|:||::|...:|..||:|||.||:|||.|             
  Fly    67 GHLIVIL-KDVRFAELQTLVEFMYKGEVNVQYCQLSALLKTAESLKVKGLAEMTNQNTTLREPER 130

  Fly   122 ---------------TAENADD----------LNDAATATITVSENIQQAVVGNIVNAAIVPGAP 161
                           :|..|.|          ...|||||.|.:.....:...:..:||....|.
  Fly   131 EPDRLRPQGGGGSGGSAHKAADSPAAALDATAATQAATATATATAAAATSTSTSATSAAATAAAT 195

  Fly   162 SPSLEQQQQHHQQQQQQQAQEQHQQQQVHAQQQQQQQQQINAALLTQHGVSSGSV---------- 216
            :.:         .............................||..|....||.||          
  Fly   196 AAT---------SASTTATAAAGSSNTTTTTAATTTATCATAATSTAATSSSSSVTSAAAAAAAA 251

  Fly   217 -SLSGQLLSSSASGSSGSLAGGQQASQTPSGLQPTPRKSRLKRSKSPDLSSGGGAGSSGGSSSGS 280
             |.||...|..|:.||.|..|.::.:...|...|..|.||:..:...|::.             .
  Fly   252 ASASGVAHSEEATSSSSSTGGQKREASDRSSPTPAKRSSRMHPADKVDVAE-------------D 303

  Fly   281 TQQQPQPAHHHHPQTIL---IQGQNPNSIVSLQQTADGNYIPVSGSGDDSDAEDHEHE------- 335
            .:|:...|.....:.:|   ::.:..:.:..|.:..:   ..:.|..:|.|.||.|.:       
  Fly   304 REQEQNQADELLSEELLGRNLKDEEDDDVDELDENEE---TKLRGRDEDDDDEDEEEDTPMPLDL 365

  Fly   336 ---------------------HNHGHGHGHGGHTHGHGHSHEHSHDHEHEHKPNKICKTEHSVAS 379
                                 .|...|..:..||:...:|:.:::::.:....|.          
  Fly   366 YQRPNVEPKSAAAATAAQQGGSNSLSGSSNACHTNSSSNSNNNNNNNNNSSSNNN---------- 420

  Fly   380 PASNSSSASNNAAGVSGVTSTGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPE 444
              :|:||...:|:...|..|:|....:.:.|..|..|.          :||              
  Fly   421 --NNTSSGKTSASSNGGTASSGGTADSVVAVDDDDDDD----------DGG-------------- 459

  Fly   445 PPAPSATPVTVTEHVDLSCNPSTDTRDLSNTTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDES 509
                                                                     |||.....
  Fly   460 ---------------------------------------------------------HHHQRQVM 467

  Fly   510 NSNLVQHIKSEVIE----------------AKHLAAQ-----HHALSQAQQQHAHHQAHQQHQQH 553
            :..|.|.:..|.::                |:.||.|     ||....||.||:.|  |..|.||
  Fly   468 DDRLEQDVDEEDLDDDVVVVGPATAMARGIAQRLAHQNLQRLHHTHHHAQHQHSQH--HHPHSQH 530

  Fly   554 QQQQHQQQQQHLH-----AQQLLAQSQLQQQQQQQQQQQQHHQQQQQQA--AAAAAAAGVHGQHG 611
            ....| .||.|.|     |..::|:|::.......:...:...:....:  .......|..|..|
  Fly   531 HHTPH-HQQHHTHSDDEDAMPVIAKSEILDDDYDDEMDLEDDDEADNSSNDLGLNMKMGSGGAGG 594

  Fly   612 GHVTHADIGGATVMEIDPSQIKHEPGMIITPE-IVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQ 675
            |       ||     :|.|     .|..:.|. ::.:.||          |..:...|..:...|
  Fly   595 G-------GG-----VDLS-----TGSTLIPSPLITLPSS----------SAAAAAAAAAAMESQ 632

  Fly   676 KEPHYTNLDQQHGLGGSVCGPGPGGAGG---------GGGMSGGAGSGSG--------------- 716
            :.....:..|..|.|.|  ....||.||         |||..||.|..|.               
  Fly   633 RSTPAMSAAQAAGAGAS--DLSIGGCGGRPASRSSRDGGGNDGGRGGASSSSLLSPGTVANLLPV 695

  Fly   717 -------EKALDALKNQNMSLTK------ASAIYGIPSTTLWQRAHRMGIETPKKEGGTKSWNED 768
                   :|.:|..::.|.|.::      |||..|:.....::.:|                 |.
  Fly   696 QSVPLSLKKEIDCSEDDNSSHSRHMQQRSASAGGGLGGDLDYRASH-----------------ES 743

  Fly   769 ALQNALEALRSGQISANKASKA---FGIPSS----TLYKI-------------------ARREGI 807
            .|:|.     |..:||..||:.   |..|.|    :|:.|                   .|..|:
  Fly   744 LLRNF-----SSPMSAMAASRCPTPFAFPFSPLGLSLFDIDPSRILSLLHHQTWLAEEALRTRGL 803

  Fly   808 RLA------------------------APFNAAPTTWTPEDLERALEAIRAGNTSVQK------- 841
            ..|                        .|...|..|.|.......:.|.|:|:|...|       
  Fly   804 LTAPKDFPHRFTTLSDLLTKDYQPGAGQPMVTATATATTASSTSQVSASRSGDTQYNKHAQQPQQ 868

  Fly   842 -------------------ASAEFGI--PTGTLYGRCKREGIELSRSNPTP----------WSED 875
                               |.|.|.:  ||.|.:.:.:::..:.::|:|:|          .|.|
  Fly   869 PQTGGATGSGVGGLGGSPTAGASFNLRYPTPTAFYQQQQQQGKGAKSSPSPQQMATSSTTVMSND 933

  Fly   876 AMNEAL-------NSVRVGQMSINQAAIHYNLPYSSLYGRFKR---------------GKYDVVA 918
            :..::.       :.|.:.::...::|..|......|..|.:|               |...|:.
  Fly   934 SGEDSCKRSSADSDEVTIMELPSERSAQLYKESLEQLLQRQRRTPILAGSGSGSGSGTGSGSVIV 998

  Fly   919 NTSGV----ALLNTSGNTTGSIEIIEHSQENSQQFPYSPSPHPP-----------TPQHHSTPQH 968
            :.:|:    .||.....:.|:.::.|.|..:      |.|..||           :|....:...
  Fly   999 DAAGLRQYTQLLLAGAGSGGASDLKEKSSSS------STSSTPPLLTQQLSQMLKSPSDTCSSLF 1057

  Fly   969 HSS----AQQGPP-TPQHMQQ---------HVVHMQQQQQQQQQQSPH--PGHHP----QHMQQD 1013
            .||    ...||. |.:.:::         |..::...:|....|.||  ||...    :...|.
  Fly  1058 SSSGGGTGSTGPGITGETIEEETRCVVCNAHFPNVWLLEQHAALQHPHVGPGEEKPFICEQCGQS 1122

  Fly  1014 VVTSSSQVVHSQQQQQ--------------------LQQIYQHHGTPERSXESLHAATLMGSTG- 1057
            ....|:...|.:|..:                    |:...:|.  ...: |.||....:|..| 
  Fly  1123 YRYRSAYAKHKEQNHRARLPADKLFTCDVCGMQFRYLKSFKKHR--LNHALERLHGKKSVGVIGR 1185

  Fly  1058 -GGGGGGVGGVAASTSDGTAASSTPFASISALVSGPSSAPPPPVTASGSSAVSGGTSKRKKANKQ 1121
             ||.|.|....|.|.|.....|.:...|::::.....::...|:.|.....:.....:...|::|
  Fly  1186 LGGSGSGPSSSAISVSVAAPTSVSASGSVTSVDQDVVTSSQEPMLADEGEDLRVNVKREGTADEQ 1250

  Fly  1122 KRXEQEDD-QPHRELETI--AGV 1141
            .. .:.:| :.|.:..|:  ||:
  Fly  1251 SAESRANDLEEHEQDNTVDSAGI 1273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
psqNP_001369078.1 BTB_POZ_BAB-like 34..118 CDD:349624 45/84 (54%)
HTH_psq 717..>747 CDD:283007 8/35 (23%)
HTH_psq 767..804 CDD:283007 13/62 (21%)
HTH_psq 821..866 CDD:283007 12/72 (17%)
HTH_psq 873..916 CDD:283007 9/64 (14%)
mamoNP_572932.2 BTB_POZ_BAB-like 30..114 CDD:349624 45/84 (54%)
C2H2 Zn finger 1082..1105 CDD:275368 3/22 (14%)
C2H2 Zn finger 1116..1137 CDD:275368 4/20 (20%)
C2H2 Zn finger 1149..1169 CDD:275368 2/21 (10%)
zf-C2H2 1469..1491 CDD:395048
C2H2 Zn finger 1471..1491 CDD:275368
zf-H2C2_2 1483..1506 CDD:463886
C2H2 Zn finger 1499..1519 CDD:275368
zf-H2C2_2 1511..1536 CDD:463886
C2H2 Zn finger 1527..1547 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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