DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pef and CalpB

DIOPT Version :10

Sequence 1:NP_610592.1 Gene:Pef / 36111 FlyBaseID:FBgn0033529 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_524016.4 Gene:CalpB / 39165 FlyBaseID:FBgn0025866 Length:925 Species:Drosophila melanogaster


Alignment Length:181 Identity:53/181 - (29%)
Similarity:84/181 - (46%) Gaps:13/181 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PPPGAFPPQNAQVSPQAQQWFSMVDRDRSGKINASELQAAL------VNGRGDHFSDNACKLMIS 77
            |||......:.|.....:.:.|:...|.  :::..||:..|      |....|.||.:|.:.|::
  Fly   744 PPPTPKEEDDPQRIALRRLFDSVAGSDE--EVDWQELKRILDHSMRDVMVGSDGFSKDAVRSMVA 806

  Fly    78 MFDNDASGTIDIYEFEKLYNYINQWLQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFINFLV 142
            |.|.|.||.:...|||.|...|.:|..|||.||...:|.|:...|..|....|:..:...:|.|.
  Fly   807 MLDKDRSGRLGFEEFEALLTDIAKWRAVFKLYDTRRTGSIDGFHLRGALNSAGYHLNNRLLNALA 871

  Fly   143 KKSDPQGHKE--VSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFEDFL 191
            .:   .|.:|  :..|.|::..::|:.|.|.||:|||..:.|.....:|:|
  Fly   872 HR---YGSREGQIPFDDFLMCAIKVRTFIEMFRERDTDNSDTAFFNLDDWL 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PefNP_610592.1 EFh_PEF_peflin 34..198 CDD:320059 49/166 (30%)
EF-hand motif 34..63 CDD:320059 6/34 (18%)
EF-hand motif 71..100 CDD:320059 11/28 (39%)
EF-hand motif 101..131 CDD:320059 10/29 (34%)
EF-hand motif 137..166 CDD:320059 6/30 (20%)
EF-hand motif 167..198 CDD:320059 10/25 (40%)
CalpBNP_524016.4 PHA03247 <40..207 CDD:223021
Peptidase_C2 260..556 CDD:459889
Calpain_III 579..716 CDD:460050
EFh_PEF_CalpA_B 758..925 CDD:320071 49/167 (29%)
EF-hand motif 758..786 CDD:320071 5/29 (17%)
EF-hand motif 799..829 CDD:320071 11/29 (38%)
EF-hand motif 830..860 CDD:320071 10/29 (34%)
EF-hand motif 866..894 CDD:320071 6/30 (20%)
EF-hand motif 895..925 CDD:320071 10/25 (40%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.