DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pef and Capn3

DIOPT Version :10

Sequence 1:NP_610592.1 Gene:Pef / 36111 FlyBaseID:FBgn0033529 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_058813.2 Gene:Capn3 / 29155 RGDID:2269 Length:821 Species:Rattus norvegicus


Alignment Length:201 Identity:54/201 - (26%)
Similarity:90/201 - (44%) Gaps:24/201 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QGYNPYAQPGGGYAPPPGAFPPQNAQVSPQAQQWFSMVDRDRSG---KINASELQAAL---VNGR 63
            ||.:|..:||             :.....:.||.|..:.|..:|   :|.|.||:..|   ||..
  Rat   633 QGESPQPRPG-------------HTDQESEEQQQFRNIFRQIAGDDMEICADELKNVLNTVVNKH 684

  Fly    64 GD----HFSDNACKLMISMFDNDASGTIDIYEFEKLYNYINQWLQVFKTYDQDSSGHIEEQELTQ 124
            .|    .|:..:|:.||::.|.|.||.:::.||..|:..|..|.::||.||.|.||.|...|:..
  Rat   685 KDLKTQGFTLESCRSMIALMDTDGSGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRN 749

  Fly   125 AFTQMGFRFSPEFINFLVKKSDPQGHKEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFED 189
            |....||..:.:..:.:..:...: |..:..|.||...|:::....||...|...:|.|.:...:
  Rat   750 AVNDAGFHLNSQLYDIITMRYADK-HMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLE 813

  Fly   190 FLTVAI 195
            :|.:.:
  Rat   814 WLQLTM 819

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PefNP_610592.1 EFh_PEF_peflin 34..198 CDD:320059 49/172 (28%)
EF-hand motif 34..63 CDD:320059 12/34 (35%)
EF-hand motif 71..100 CDD:320059 10/28 (36%)
EF-hand motif 101..131 CDD:320059 11/29 (38%)
EF-hand motif 137..166 CDD:320059 5/28 (18%)
EF-hand motif 167..198 CDD:320059 6/29 (21%)
Capn3NP_058813.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Peptidase_C2 77..415 CDD:459889
Domain III 418..586
Calpain_III 435..574 CDD:460050
Calpain_u2 583..653 CDD:465216 6/32 (19%)
Linker 587..649 5/28 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 603..651 5/30 (17%)
Domain IV 650..820 49/171 (29%)
EFh_PEF_CAPN3 653..821 CDD:320065 47/168 (28%)
EF-hand motif 653..681 CDD:320065 8/27 (30%)
EF-hand motif 696..725 CDD:320065 10/28 (36%)
EF-hand motif 726..756 CDD:320065 11/29 (38%)
EF-hand motif 761..790 CDD:320065 5/29 (17%)
EF-hand motif 791..821 CDD:320065 6/29 (21%)
Blue background indicates that the domain is not in the aligned region.

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