DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pef and clp-3

DIOPT Version :10

Sequence 1:NP_610592.1 Gene:Pef / 36111 FlyBaseID:FBgn0033529 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_493052.3 Gene:clp-3 / 173089 WormBaseID:WBGene00000544 Length:752 Species:Caenorhabditis elegans


Alignment Length:180 Identity:34/180 - (18%)
Similarity:58/180 - (32%) Gaps:75/180 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 QAQQWF-SMVDRDRSGKIN-----------ASELQAALVNGRGDHF-------SDNACKLMISMF 79
            |:|||. :..:.:.|.:|.           .:.||..:      ||       |::.|.::.::|
 Worm   580 QSQQWIQASFEGEWSSRIGTAGGCDDHDTFCTNLQYEI------HFRATDSYDSNHKCTIIAALF 638

  Fly    80 DNDASGTID-----------IYEF--------------------EKLYN-----------YINQW 102
            ..:....:.           :||.                    .||:.           .:..:
 Worm   639 QKNRDHCVYKGLELFLIGLLVYEMPGPNEKVTPEMVKSQTPIADSKLFKDSREANIRFTVPLGHY 703

  Fly   103 LQVFKTYDQDSSGHIEEQELTQAFTQMGFRFSPEFIN--FLVKKSDPQGH 150
            :.|..|||.|..|..    |.:.||.:.|..:....|  .|:.|||  ||
 Worm   704 VIVPSTYDPDQDGEF----LLRIFTNVDFDKTHALSNGIGLICKSD--GH 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PefNP_610592.1 EFh_PEF_peflin 34..198 CDD:320059 34/180 (19%)
EF-hand motif 34..63 CDD:320059 8/40 (20%)
EF-hand motif 71..100 CDD:320059 6/70 (9%)
EF-hand motif 101..131 CDD:320059 9/29 (31%)
EF-hand motif 137..166 CDD:320059 7/16 (44%)
EF-hand motif 167..198 CDD:320059
clp-3NP_493052.3 MDN1 <7..>127 CDD:444083
CysPc 254..559 CDD:238004
Calpain_III 582..732 CDD:238132 26/159 (16%)
Blue background indicates that the domain is not in the aligned region.

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