DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pef and gca

DIOPT Version :10

Sequence 1:NP_610592.1 Gene:Pef / 36111 FlyBaseID:FBgn0033529 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001119547.1 Gene:gca / 100125139 XenbaseID:XB-GENE-983090 Length:203 Species:Xenopus tropicalis


Alignment Length:203 Identity:70/203 - (34%)
Similarity:110/203 - (54%) Gaps:15/203 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YGQGY---NPYAQPGGGYAPPPGAF-PPQNAQVSPQAQQWFSMVDRDRSGKINASELQAAL---- 59
            || ||   ||:.|..|......|.| .||..:..|....:.::..:|  |:|:|.|||..|    
 Frog     6 YG-GYGNMNPHMQMMGQTMAQGGYFGQPQYHEGDPLWGYFRAVAGQD--GEIDAEELQRCLTQAG 67

  Fly    60 VNGRGDHFSDNACKLMISMFDNDASGTIDIYEFEKLYNYINQWLQVFKTYDQDSSGHIEEQELTQ 124
            :.|....||...|:::|:|.|.|.:|.:...||::::..::.|.|.|.|:|||.||.:|..||.|
 Frog    68 IQGTYTPFSLETCRVLIAMLDRDFTGKMGFSEFKEVWGALSAWKQNFCTFDQDRSGTVEPHELNQ 132

  Fly   125 AFTQMGFRFSPEFINFLVKKSDPQGHKEVSVDQFIVLCVQVQRFTEAFRQRDTQQNGTITIGFED 189
            |...||:|.||..::.:||:....|  .:..|.::..||:::..|:.||:||..|.|.:...::|
 Frog   133 AIFAMGYRLSPPTLSTIVKRYSKNG--RIYFDDYVACCVKLRALTDVFRRRDGMQQGFVNFIYDD 195

  Fly   190 FL--TVAI 195
            ||  |:||
 Frog   196 FLQCTMAI 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PefNP_610592.1 EFh_PEF_peflin 34..198 CDD:320059 57/168 (34%)
EF-hand motif 34..63 CDD:320059 8/32 (25%)
EF-hand motif 71..100 CDD:320059 8/28 (29%)
EF-hand motif 101..131 CDD:320059 15/29 (52%)
EF-hand motif 137..166 CDD:320059 6/28 (21%)
EF-hand motif 167..198 CDD:320059 13/31 (42%)
gcaNP_001119547.1 EFh_PEF_grancalcin 39..203 CDD:320061 56/167 (34%)
EF-hand motif 39..67 CDD:320061 9/29 (31%)
EF-hand motif 79..108 CDD:320061 8/28 (29%)
EF-hand motif 109..139 CDD:320061 15/29 (52%)
EF-hand motif 145..172 CDD:320061 6/28 (21%)
EF-hand motif 173..203 CDD:320061 11/29 (38%)

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