DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and crot

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001128278.1 Gene:crot / 733879 XenbaseID:XB-GENE-988067 Length:481 Species:Xenopus tropicalis


Alignment Length:487 Identity:151/487 - (31%)
Similarity:240/487 - (49%) Gaps:54/487 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 YSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEFEQTIGKKLQWYLILKSWWST 229
            :.:|.|||.||:||:.:::::|..:|:|.|:.|.|.|..::.|.||..|||:|...|:.::.:..
 Frog    14 FQYQDSLPPLPVPSLAESLSKYCDAVKPFLNQEEYERTCQIVKAFENGIGKELHQKLLQRARFKK 78

  Fly   230 NYVSDWWEEYVYLRGRSPLCVNSNFYGTDAIFMNL--TDK--QAARAANVISLLLNFRRLIEHQE 290
            |::.:||....||..|.|..:|.||.|......:.  .:|  |..||:..:...|.:..||..::
 Frog    79 NWLEEWWLNAAYLDVRMPSQLNVNFGGPAPYLEHYWPAEKGTQLQRASIAVWYTLKYWELIRREK 143

  Fly   291 LQPIMVQGM-----IPLCSWQYERTFNTARVPGLETDRIIHYRDS--------NHIVVLHKGCYY 342
            |      |:     .||...|:...|||.::||...| ||..|..        .|:.|:.:|..:
 Frog   144 L------GVHKAVNYPLDMSQFRNLFNTCKIPGRTRD-IISSRFKTESEGSCPTHLAVMARGRIF 201

  Fly   343 KMLIYYKGRILRPCEL--QVQ-IEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSWG-VN 403
            ......:|:||.|.||  |:| |::|.:.:...:    .|:|||...|::||:.|....|.. :|
 Frog   202 TFDAVPEGQILTPPELLRQLQYIQDICQTEPAGI----GLSALTTEERTRWAQIREHLISLDPMN 262

  Fly   404 QTSLRTIESAAFVLSLDD-EPFEFDLARPELLDNFGKKLLHGNGYNRWFDKCFTVCVGTNGRVGF 467
            .|.|..|:|:.|:||||. .|:    ..||.........|.|:...||.||.:.:...:||..|.
 Frog   263 STHLEDIQSSLFILSLDSASPY----GTPEDYSQIAMMALAGDPTVRWGDKSYNLIAWSNGVFGS 323

  Fly   468 NAEHTWSDAAIASHMWENLIVDDLVSDGYDET-----GNTKGTPAFQP-PTPTRLTWDL-KPCLA 525
            |.:|...||.:...|          .|..|:.     |..||:.|.:. |.|..|.:.: :..|.
 Frog   324 NCDHAPYDAMVLVAM----------CDYIDQNVKACEGRWKGSAAVRELPNPKELVFTVDQKILK 378

  Fly   526 QIEEATIDVTKLINEVNLRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASM 590
            .|..|.....|..:::.:.......:||..:||.::.||.::|:|||||||:..|.....||.:.
 Frog   379 DIAIAKEQYYKQASDLQIVNYAFTSFGKQLVKKKKLHPDTFVQLALQLAYYKIHGCPGCCYETAT 443

  Fly   591 TRLFREGRTETVRPCTIESSAWVKAMQNPNTT 622
            ||:|..|||||:||||:|::.|.::|.:|.:|
 Frog   444 TRMFYHGRTETMRPCTVEAATWCRSMLDPLST 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093
Carn_acyltransf 171..759 CDD:279140 149/481 (31%)
crotNP_001128278.1 Carn_acyltransf 20..>475 CDD:279140 148/479 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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