DRSC/TRiP Functional Genomics Resources

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Protein Alignment whd and crata

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001027489.1 Gene:crata / 613081 XenbaseID:XB-GENE-996699 Length:625 Species:Xenopus tropicalis


Alignment Length:650 Identity:195/650 - (30%)
Similarity:343/650 - (52%) Gaps:72/650 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 VAVVRVLSSWNKPGLY-SFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEFEQT- 212
            |.:|:.:|....||.| :.|..||.||:|.::.|:.:||.:::||:..|.::....|.::|..: 
 Frog    13 VRLVKPVSLAKLPGRYLAHQEGLPCLPVPPLQQTLDKYLLALKPLVSLEEWSLTRVLVEDFRTSG 77

  Fly   213 IGKKLQWYLILKSWWSTNYVSDWWEEYVYLRGRSPLCVNSNFYGTDAIFMNLTDKQAAR--AANV 275
            :|::||..|..::..:.|::|:||.:..||..|.|:.|:|| .|......:..|:|...  ||.:
 Frog    78 VGERLQKGLERRARKTENWLSEWWLQTAYLEYRMPVVVHSN-PGVVLPKQDFEDRQGQLRFAAKL 141

  Fly   276 ISLLLNFRRLIEHQELQPIMVQGMIPLCSWQYERTFNTARVPGLETDRIIHYRDSN----HIVVL 336
            |..:|:|:.:::::.| |:...|..|||..||.:..::.|:||.:.|.:.:|..::    ||.|:
 Frog   142 IEGVLDFKTMVDNETL-PVEYLGGKPLCMNQYYQMLSSCRIPGPKRDTVANYSQASKPPTHITVV 205

  Fly   337 HKGCYYKMLIYYK-GRILRPCELQVQIEEILKGKATPVE-GEEHLAALTAWNRSKWAEARNTFFS 399
            |...::::.:|.. |..|...::..|:|:|.   .|.:: .:|.:..||..:|:.||:|.|....
 Frog   206 HNFQFFELDVYNSDGTPLTSDQIFTQLEKIW---GTSLQTNKEPIGILTTNHRNSWAKAYNNLIK 267

  Fly   400 WGVNQTSLRTIESAAFVLSLD-------DEPFEFDLARPELLDNFGKKLLHGNGY-----NRWFD 452
            ...|:.|:|||:.:.|.:.||       |:.::..:|         .::|||.|.     |||||
 Frog   268 DKTNKESVRTIQKSIFTVCLDAPIPRVSDDLYQSQVA---------AQMLHGGGSRWNSGNRWFD 323

  Fly   453 KCFTVCVGTNGRVGFNAEHTWSD----AAIASHMWENLIVDDLVSDGYDETGNTKGTPAFQPPTP 513
            |.....|..:|..|...||..::    .|:..|:.|           |.:......:|....|.|
 Frog   324 KTLQFIVAEDGSCGLVYEHAPAEGPPIVALIDHVVE-----------YTKRPELIRSPMMPLPMP 377

  Fly   514 TRLTWDLKPCLA-QIEEATIDVTKLINEVNLRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYR 577
            .:|.:::.|.:. .||:|..::..:::::::::.|...:||.|.|..::||||:||:||||:|||
 Frog   378 KKLRFNITPEIKNDIEKAKQNLNIMVHDLDVKVFVFSVFGKNFPKSEKLSPDAFIQLALQLSYYR 442

  Fly   578 DAGRFSLTYEASMTRLFREGRTETVRPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQ 642
            ...:...|||::..|:||.|||:|:|..:|:|..:|:||.:|:..|.|:|.:::.|...|: .|.
 Frog   443 MYKQVCATYESASLRMFRLGRTDTIRSASIDSENFVQAMDDPSKQNQEKVDLLRKAVQAHR-AYT 506

  Fly   643 D-AMCGRGIDRHL--FCLYVVSKYLEVDSPFLNE--VLSEPWRLSTSQTPHGQTPKMDLKKHPNC 702
            | |:.|..|||||  ..|..:...:.:...|::.  .::..:.|||||.|    .|.|      |
 Frog   507 DMAINGNAIDRHLLGLKLQAIEDLVSMPELFMDTSYAVAMHFNLSTSQVP----AKTD------C 561

  Fly   703 ISAGGGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFEQHMK 767
            :..   ||||..|||||.| ...|:.|.|.:||..:|.:|:..|.|..:.:||.|::.:.::..|
 Frog   562 VMC---FGPVVPDGYGVCY-NPMEDHINFAVSAFNSCAETNAARLAHYLERALCDMQQLVQRTPK 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093
Carn_acyltransf 171..759 CDD:279140 187/618 (30%)
crataNP_001027489.1 Carn_acyltransf 35..614 CDD:376382 187/618 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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