DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and cratb

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001004594.2 Gene:cratb / 447855 ZFINID:ZDB-GENE-040912-162 Length:614 Species:Danio rerio


Alignment Length:634 Identity:176/634 - (27%)
Similarity:313/634 - (49%) Gaps:88/634 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 SLPRLPLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEF--EQTIGKKLQWYLILKSWWSTNYV 232
            |:|..|:|.:..|:.|||.::.|||.::......|:.:||  ...:|:.||..||.::..|.|::
Zfish    26 SVPYQPVPPLGQTLQRYLAALEPLLPEDELEHTRRIVQEFGCAGGLGESLQRELIKRAKHSHNWI 90

  Fly   233 SDWWEEYVYLRGRSPLCVNSNFYGTDAIFM---NLTD--KQAARAANVISLLLNFRRLIEHQELQ 292
            ||||.::.||..|.||.|:||    .||.:   :.||  .|...|:.:|:.:|||:..::...|.
Zfish    91 SDWWVQWAYLECRQPLAVHSN----PAISLPKRDFTDWRGQLVFASKLIAGVLNFKAEVDSGRLA 151

  Fly   293 PIMVQGMIPLCSWQYERTFNTARVPGLETDRIIHY----RDSNHIVVLHKGCYYKMLIYYK-GRI 352
            ...::|. |||...:.:.|::.|:||.:.|.::||    |...||.|:....::::.:|.. |..
Zfish   152 IEYMRGN-PLCMELFPKLFSSCRIPGPKHDLVVHYGRPRRGPAHITVVRNYQFFQLDVYNSDGTP 215

  Fly   353 LRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSLRTIESAAFVL 417
            |...::..|:..| :.::...: :|.:..||:.:|..|.:|........:|:.|:|.||.:.|.|
Zfish   216 LTESQIHAQLLRI-RSQSWKTD-KEPMGILTSEHRHTWGQAYTRLLRDKINKESVRLIEKSLFTL 278

  Fly   418 SLD-------DEPFEFDLARPELLDNFGKKLLHGNGY-----NRWFDKCFTVCVGTNGRVGFNAE 470
            .||       ||.:...:|         .::|||.|.     ||||||.....||.:|..|...|
Zfish   279 CLDSPVMRISDENYSSRMA---------AQILHGGGTYSNSGNRWFDKTLQFVVGEDGSWGLLYE 334

  Fly   471 HTWSD----AAIASHMWENLIVDDLVSDGYDETGNTKGTPAFQPPTPTRL--------TWDLKPC 523
            |..::    |.:..|:.|...:.|.|.           .|....|.|.:|        .|||   
Zfish   335 HATAEGPPIATLLDHVLEYCKMTDSVR-----------APLIPLPMPKKLYFYINSEIKWDL--- 385

  Fly   524 LAQIEEATIDVTKLINEVNLRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEA 588
              ::.:..:|:  |||:::::....|.:||.|:|:.::||::::|:|:||||||.........:.
Zfish   386 --EMAKQNLDI--LINDLDIKCFNFQCFGKKFVKQLKLSPNSFVQLAIQLAYYRVHNEVCAACDI 446

  Fly   589 SMTRLFREGRTETVRPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQDAMCGRGIDRH 653
            :..|:||.|||:.:|..|.:..::::|..:...:.:.::::::.|.:.:.|..:.::.|:|||||
Zfish   447 ASLRMFRGGRTDYIRSPTNQMLSFIQAFDDVAVSREAKIQLLREAVNAYSLLTEQSLMGQGIDRH 511

  Fly   654 L--FCLYVVSKYLEVDSPFLNEV--LSEPWRLSTSQTPHGQTPKMDLKKHPNCISAGGGFGPVAD 714
            |  ..|..:...|.|...|::..  |:..|:|.|.|.|......|       |      |||:..
Zfish   512 LLGLKLQAIENGLSVPRIFMDTAYGLATHWKLRTGQVPTNTDSVM-------C------FGPLVP 563

  Fly   715 DGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFE 763
            |||.|.|....::| .|.::|...|:.|:..:.|..:.::|.|::.:|:
Zfish   564 DGYAVCYNPQQDHL-HFSVTAFNCCEDTNAEKLALTLERSLRDVQELFQ 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093
Carn_acyltransf 171..759 CDD:279140 174/627 (28%)
cratbNP_001004594.2 Carn_acyltransf 28..607 CDD:279140 174/626 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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