DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and ChAT

DIOPT Version :10

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_477004.5 Gene:ChAT / 42249 FlyBaseID:FBgn0000303 Length:721 Species:Drosophila melanogaster


Alignment Length:703 Identity:200/703 - (28%)
Similarity:313/703 - (44%) Gaps:111/703 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 GWMYESRAPGSRVSLPTMLWVAVVRVLSSWNKPGLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLL 194
            ||      ..|.:|:|.. |::....:..      :.|..:||::|:|::.:||..|:|::.|:.
  Fly    60 GW------KDSILSIPKK-WLSTAESVDE------FGFPDTLPKVPVPALDETMADYIRALEPIT 111

  Fly   195 DDENYTRMERLAKEFE--QTIGKKLQWYLILKSWWSTNYVSDWWEEYVYLRGRSPLCVNSNFYGT 257
            ......|.:.|.::|.  |.||.:|..||:.|.....|:...:|...:|:..|.||.:|||   .
  Fly   112 TPAQLERTKELIRQFSAPQGIGARLHQYLLDKREAEDNWAYYYWLNEMYMDIRIPLPINSN---P 173

  Fly   258 DAIF----MNLTDKQAARAANVISLLLNFRRLIEHQEL---QPIMVQGMIPLCSWQYERTFNTAR 315
            ..:|    .......|..||.::..:|:.|.:::..||   :....:...|||..||.|...:.|
  Fly   174 GMVFPPRRFKTVHDVAHFAARLLDGILSHREMLDSGELPLERAASREKNQPLCMAQYYRLLGSCR 238

  Fly   316 VPGLETD-RIIHYR-----DSNHIVVLHKGCYYKMLIYYKGR-ILRPCELQVQIEEILK------ 367
            .||::.| :.:..|     :..|:||:.:...|.:::....| .|...|:..||..:|.      
  Fly   239 RPGVKQDSQFLPSRERLNDEDRHVVVICRNQMYCVVLQASDRGKLSESEIASQILYVLSDAPCLP 303

  Fly   368 GKATPVEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSLRTIESAAFVLSLDDEPFE------- 425
            .|..||      ..|||..||.||..|........||.:|..||:|..||.| |||..       
  Fly   304 AKPVPV------GLLTAEPRSTWARDREMLQEDERNQRNLELIETAQVVLCL-DEPLAGNFNARG 361

  Fly   426 FDLARPEL-------LDNFGKKLLHGNGY-----NRWFDKCFTVCVGTNGRVGFNAEHTWSDAAI 478
            |..|.|.:       ..|...:::||.|.     ||||||...:.:.|:|..|...||:.|:...
  Fly   362 FTGATPTVHRAGDRDETNMAHEMIHGGGSEYNSGNRWFDKTMQLIICTDGTWGLCYEHSCSEGIA 426

  Fly   479 ASHMWENLIVDDLVSDGYDETGNTKGTPAFQPPTPTRLTWDLKPCL-AQIEEATIDVTKLINEVN 542
            ...:.|.:.  ..:.:..||   ..|.|....|.|.||.|.:.|.| .:..:|:..|.|.|::::
  Fly   427 VVQLLEKIY--KKIEEHPDE---DNGLPQHHLPPPERLEWHVGPQLQLRFAQASKSVDKCIDDLD 486

  Fly   543 LRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMTRLFREGRTETVRPCTI 607
            ..:..:|.|||.|:|.|::|||.|||:|||||:|:..||...|||::.||.|..||.:.:|..:.
  Fly   487 FYVYRYQSYGKTFIKSCQVSPDVYIQLALQLAHYKLYGRLVATYESASTRRFLHGRVDCIRAAST 551

  Fly   608 ESSAWVKAMQNPNTTN--------DE----RVK-----------MMQAACDRHQLGYQDAMCGRG 649
            |:..|.|||......|        ||    :||           :.:.|..|........:.|.|
  Fly   552 EALEWAKAMCQGEGANVPLESDREDEEESRKVKFSIYSKDHLRELFRCAVARQTEVMVKNILGNG 616

  Fly   650 IDRHLFCLYVVSKYL--EVDSPFLNE--VLSEPWRLSTSQTPHGQTPKMDLKKHPNCISAGGGFG 710
            ||..|..|...|..:  |:...|.:|  ::|:.:.|||||........|             |:|
  Fly   617 IDIPLLGLREASIEVTGEMHELFKDESYIISQCFLLSTSQVACSTDSFM-------------GYG 668

  Fly   711 PVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFE 763
            ||...|||.||....|.::|. :||..:|:.|...|:|:::..:|..:|.:.:
  Fly   669 PVTPRGYGCSYNPHPEQIVFC-VSAFYSCEDTSASRYAKSLQDSLDIMRDLLQ 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..47 CDD:465132
Carn_acyltransf 174..753 CDD:459926 189/647 (29%)
ChATNP_477004.5 Carn_acyltransf 92..710 CDD:459926 189/646 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.