DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and Crat

DIOPT Version :10

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001004085.1 Gene:Crat / 311849 RGDID:1303031 Length:626 Species:Rattus norvegicus


Alignment Length:630 Identity:189/630 - (30%)
Similarity:335/630 - (53%) Gaps:72/630 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 QGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEFEQT--IGKKLQWYLILKSWWSTN 230
            |.:|||||:|.::.::..||::::|::.:|.:...::|..||:.:  :|::||..|..::....|
  Rat    32 QDALPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMEN 96

  Fly   231 YVSDWWEEYVYLRGRSPLCVNSNFYGTDAI------FMNLTDKQAARAANVISLLLNFRRLIEHQ 289
            ::|:||.:..||:.|.|:.:    |.:..:      ||:| ..|...||.:|..:|:|:.:|:::
  Rat    97 WLSEWWLKTAYLQFRQPVVI----YSSPGVLLPKQDFMDL-QGQLRFAAKLIEGVLDFKSMIDNE 156

  Fly   290 ELQPIMVQGMIPLCSWQYERTFNTARVPGLETDRIIHYRDS----NHIVVLHKGCYYKMLIYYK- 349
            .| |:...|..|||..||.:..::.|||||:.|.::::..|    .||.|:|...::::.:|:. 
  Rat   157 TL-PVEFLGGQPLCMNQYYQILSSCRVPGLKQDSVVNFLKSKKPPTHITVVHNYQFFELDVYHSD 220

  Fly   350 GRILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSLRTIESAA 414
            |..|...::.||:|:|......  ..:|.:..||:.:|:.||:|.::.....||:.|:.:|:.:.
  Rat   221 GTPLTSDQIFVQLEKIWNSSLQ--SNKEPVGILTSNHRNSWAKAYSSLIKDKVNRESVNSIQKSI 283

  Fly   415 FVLSLDDEPFEFDLARPELLDNFGK-----KLLHGNGY-----NRWFDKCFTVCVGTNGRVGFNA 469
            |.:.||.:.       |.:.|:..:     ::|||.|.     ||||||.....|..:|..|...
  Rat   284 FTVCLDKQV-------PRVSDDVYRSHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVY 341

  Fly   470 EHTWSD----AAIASHMWENLIVDDLVSDGYDETGNTKGTPAFQPPTPTRLTWDLKPCLA-QIEE 529
            ||..::    .|:..|:.|.....:||.           :|....|.|.:|.:::.|.:. .||:
  Rat   342 EHAAAEGPPIVALVDHVMEYTKKPELVR-----------SPMVPLPMPKKLRFNITPEIKNDIEK 395

  Fly   530 ATIDVTKLINEVNLRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMTRLF 594
            |..:::.:|.::::.:||...:||.|.|..::||||:||:||||||||..|:...|||::..|:|
  Rat   396 AKQNISIMIQDLDIMMLVFHHFGKDFPKSQKLSPDAFIQIALQLAYYRIYGQACATYESASLRMF 460

  Fly   595 REGRTETVRPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQDAMCGRGIDRHL--FCL 657
            ..|||:|:|..:.:|.|:||.|.:|.....:||::::.|...|:.....|:.|...||||  ..|
  Rat   461 HLGRTDTIRSASTDSLAFVKGMDDPKVPEQQRVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKL 525

  Fly   658 YVVSKYLEVDSPFLNE--VLSEPWRLSTSQTPHGQTPKMDLKKHPNCISAGGGFGPVADDGYGVS 720
            ..:...:.:...|::.  .::..:.|||||.|    .|.|      |:.:   ||||..||||:.
  Rat   526 QAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVP----AKTD------CVMS---FGPVVPDGYGIC 577

  Fly   721 YIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFEQH 765
            | ...|..|.|.:||..:|.:|:..|.|..:.:||.|:|::.:.|
  Rat   578 Y-NPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNH 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..47 CDD:465132
Carn_acyltransf 174..753 CDD:459926 180/610 (30%)
CratNP_001004085.1 Carn_acyltransf 38..609 CDD:459926 180/610 (30%)
Microbody targeting signal. /evidence=ECO:0000255 624..626
Blue background indicates that the domain is not in the aligned region.

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