DRSC/TRiP Functional Genomics Resources

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Protein Alignment whd and Chat

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_001164064.1 Gene:Chat / 290567 RGDID:1304627 Length:644 Species:Rattus norvegicus


Alignment Length:651 Identity:197/651 - (30%)
Similarity:310/651 - (47%) Gaps:77/651 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 SSWNKPGLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEFEQT--IGKKLQW 219
            |||.       :..||:||:|.::.|:..||:.::.|:.:|.:.:.:.:.|.|...  :|:.||.
  Rat    16 SSWE-------ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQE 73

  Fly   220 YLILKSWWSTNYVSDWWEEYVYLRGRSPLCVNSNFYGTDAIFMNL----TDKQAARAANVISLLL 280
            .|:.:...:.|:||::|...:||..|..|.|||:   ...||...    |:.|...||.:||.:|
  Rat    74 KLLERQEKTANWVSEYWLNDMYLNNRLALPVNSS---PAVIFARQHFQDTNDQLRFAACLISGVL 135

  Fly   281 NFRRLIEHQELQPIMVQGMI---PLCSWQYERTFNTARVPGLETDRIIHYRDS-----NHIVVLH 337
            :::.|::...|.....:|.:   |||..||.|.|::.|:||...|.::..:.|     .|::|..
  Rat   136 SYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPEHVIVAC 200

  Fly   338 KGCYYKMLIYYKGRILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSWGV 402
            ...::.:.:....|.|...:|..|:.:|:|..:...|....:..||:..||:||:||........
  Rat   201 CNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDST 265

  Fly   403 NQTSLRTIESAAFVLSLDDEPFEFDLARPELLDNF-GKKLLHG-----NGYNRWFDKCFTVCVGT 461
            |:.||..||....::.||..      ...||.|.. ..:||||     ||.|||:||.....||.
  Rat   266 NRDSLDMIERCICLVCLDGP------GTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGR 324

  Fly   462 NGRVGFNAEHTWSDAAIASHMWENLIVDDLVSDGYDETGNTK---GTPAFQPPTPTRLTWDLKP- 522
            :|..|...||:..|..:.....|:|:...:       |.|.|   .....:.|.|.||.|...| 
  Rat   325 DGTCGVVCEHSPFDGIVLVQCTEHLLKHMM-------TSNKKLVRADSVSELPAPRRLRWKCSPE 382

  Fly   523 ---CLAQIEEATIDVTKLINEVNLRILVHQ--DYGKGFMKKCRISPDAYIQMALQLAYYRDAGRF 582
               .||...|....:.|     ||..:|::  :|||.|:||.:.|||.:||:||||||||...|.
  Rat   383 TQGHLASSAEKLQRIVK-----NLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAYYRLYQRL 442

  Fly   583 SLTYEASMTRLFREGRTETVRPCTIESSAWVKAMQNPNTT--NDERVKMMQAACDRHQLGYQDAM 645
            ..|||::..|.|:|||.:.:|..|.|:.|:|:||.:....  ..|:::::|.|..........|:
  Rat   443 VPTYESASIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAI 507

  Fly   646 CGRGIDRHLFCLYVVSKYLEVDSP--FLNE--VLSEPWRLSTSQTPHGQTPKMDLKKHPNCISAG 706
            .|..||.||..|..:::.|..:.|  |::|  ::|..:.|||||.|  .|.:|      .|.   
  Rat   508 TGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVP--TTMEM------FCC--- 561

  Fly   707 GGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFEQHMKDHPK 771
              :|||..:|||..|....| .|.|.||:..:|::|....||:.:..:|.|:|.:.........|
  Rat   562 --YGPVVPNGYGACYNPQPE-AITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQPADSK 623

  Fly   772 P 772
            |
  Rat   624 P 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093
Carn_acyltransf 171..759 CDD:279140 191/622 (31%)
ChatNP_001164064.1 Carn_acyltransf 23..611 CDD:395612 191/622 (31%)
Coenzyme A binding. /evidence=ECO:0000305 412..424 6/11 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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