DRSC/TRiP Functional Genomics Resources

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Protein Alignment whd and Cpt2

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:NP_037062.1 Gene:Cpt2 / 25413 RGDID:2398 Length:658 Species:Rattus norvegicus


Alignment Length:704 Identity:207/704 - (29%)
Similarity:330/704 - (46%) Gaps:122/704 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 LMYKGWMYESRAPGSRVSLPTMLWVAVVRVLSSWNKPGLY---------SFQGSLPRLPLPSVKD 181
            |:::.|   .|.|...:..|:       |.||:.:.|..|         .:|.||||||:|.::|
  Rat     5 LLFRAW---PRCPSLVLGAPS-------RPLSAVSGPDDYLQHSIVPTMHYQDSLPRLPIPKLED 59

  Fly   182 TMTRYLRSVRPLLDDENYTRMERLAKEFEQTIGKKLQWYLIL--KSWWSTNYVSDWWEEYVYLRG 244
            ||.|||.:.:|||||..:.|.|.|.|.||..:||:|..:|:.  |....|:|:|..|.: :||..
  Rat    60 TMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLAQDKQNKHTSYISGPWFD-MYLTA 123

  Fly   245 RSPLCVNSN-FYGTDAIFMNLTDKQAARAANVISLLLNFRRLIEHQELQP--------------- 293
            |..:.:|.| |...:....:..:.|..||.|:....:.|.:.::...|:|               
  Rat   124 RDSIVLNFNPFMAFNPDPKSEYNDQLTRATNLTVSAVRFLKTLQAGLLEPEVFHLNPSKSDTDAF 188

  Fly   294 -IMVQGMIPLCSW--------------QYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYK 343
             .:::.:.|..||              ||.|.||:.|:|....|.:.....:.|::||.||.:|.
  Rat   189 KRLIRFVPPSLSWYGAYLVNAYPLDMSQYFRLFNSTRIPRPNRDELFTDTKARHLLVLRKGHFYV 253

  Fly   344 M-LIYYKGRILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSL 407
            . ::...|.|:.|.|:|..::.|| ..::||. |..:|.||:.||..|||.|......| |:.:|
  Rat   254 FDVLDQDGNIVNPLEIQAHLKYIL-SDSSPVP-EFPVAYLTSENRDVWAELRQKLIFDG-NEETL 315

  Fly   408 RTIESAAFVLSLDDEPFEFDLARPELLDNFGKKLLHGNGYNRWFDKCFTVCVGTNGRVGFNAEHT 472
            :.::||.|.|.|||.|.: ||.      :....:|||:|.||||||.|.:.|..:|....:.||:
  Rat   316 KKVDSAVFCLCLDDFPMK-DLI------HLSHTMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHS 373

  Fly   473 WSDAAIASHMWENLIVDDLVSDGYDETGNTKGTPAFQP---PTPTR-------LTWDLKPCL-AQ 526
            |.|.......:..:..|            :..|||..|   |..|.       |:::|...| |.
  Rat   374 WGDGVAVLRFFNEVFRD------------STQTPAITPQSQPAATNSSASVETLSFNLSGALKAG 426

  Fly   527 IEEATIDVTKLINEVNLRILVHQDYGKGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMT 591
            |..|.......:..:::..:..|..||.|:||.::||||..|:|.|:|:.|..|:...|||:..|
  Rat   427 ITAAKEKFDTTVKTLSIDSIQFQRGGKEFLKKKQLSPDAVAQLAFQMAFLRQYGQTVATYESCST 491

  Fly   592 RLFREGRTETVRPCTIESSAWVKA-MQNPNTTNDERVKMMQAACDRH--QLGYQDAMCGRGIDRH 653
            ..|:.|||||:||.:|.:....:| :::|:..:...::.|.|.|.::  ||..:.|| |:|.|||
  Rat   492 AAFKHGRTETIRPASIFTKRCSEAFVRDPSKHSVGELQHMMAECSKYHGQLTKEAAM-GQGFDRH 555

  Fly   654 LFCL-YVVSK--------YLEVDSPFLNEVLSEPWRLSTSQTPHGQTPKMDLKKHPNCISAGGGF 709
            |:.| |:.:.        ||:.....:|..:     ||||..   .:|.:.|          |||
  Rat   556 LYALRYLATARGLNLPELYLDPAYQQMNHNI-----LSTSTL---NSPAVSL----------GGF 602

  Fly   710 GPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALSDIRSMFE 763
            .||..||:|::|.: .::.|..::|:.:   ..:...|...:.:.|.||....|
  Rat   603 APVVPDGFGIAYAV-HDDWIGCNVSSYS---GRNAREFLHCVQKCLEDIFDALE 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093
Carn_acyltransf 171..759 CDD:279140 193/644 (30%)
Cpt2NP_037062.1 Carn_acyltransf 49..648 CDD:279140 193/644 (30%)
Coenzyme A binding. /evidence=ECO:0000250 452..464 6/11 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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