DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and mhc1-uba6

DIOPT Version :10

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_002938998.1 Gene:mhc1-uba6 / 100490553 XenbaseID:XB-GENE-5820456 Length:346 Species:Xenopus tropicalis


Alignment Length:385 Identity:73/385 - (18%)
Similarity:127/385 - (32%) Gaps:114/385 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 FLAALVVWLSIC------FTMRYTLKLLLMYKGWMYESRAPGSRVSLPTMLWVAVVRVLSSWNKP 162
            ::..|:..|.:|      .|:.|.:.|:        .|.|||    :|.    :.:.|.....|.
 Frog     3 YIVVLLFSLGVCAVHCGSHTLEYHIALV--------SSPAPG----VPQ----STITVYIDGLKY 51

  Fly   163 GLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDD--ENYTRMERLAKEFEQTIGKKLQWYLILKS 225
            |.|               |:.||..|.:.|.|..  |:.....:.|:.|| .|.|....:|    
 Frog    52 GKY---------------DSETRRARFLTPSLSSLTEHLDMQTKYAQRFE-VIQKHKMAFL---- 96

  Fly   226 WWSTNYVSDWW---EEYVYLRG-RSPLCVNSNFYGTDAIFMNLTDKQAARAANVISLLLNFRRLI 286
               |.|::..:   :.:||.|. ...|..:....|.:.|..|  .|:.        ::.:..|::
 Frog    97 ---TGYLNRTYGNGDFHVYQRRFACELHEDGTVSGYEEIAYN--GKEV--------MMFDKERVV 148

  Fly   287 EHQELQPIMVQGMIPLCSWQYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYKMLIYYKGR 351
            .....|.::..      :.|:.:.:|.|::     ::|....:..|        |.||.:.|   
 Frog   149 YVPVTQEVLTM------TQQWNQHYNDAKI-----NKIYMENECIH--------YMKMYLPY--- 191

  Fly   352 ILRPCELQVQIEEILKGKATP---VEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSLRTIESA 413
                      |...|:.|..|   |...|.::......|......|:....|..|:......|.|
 Frog   192 ----------ISTDLERKVHPEVKVSSSESVSGTKLHCRVYGFYPRDVDVKWIKNERDEIYSEEA 246

  Fly   414 AFVLSLDDEPFEFDLA---RPELLDNFGKKLLHGNGYNRWFD-----KCFTVCVGTNGRV 465
            |.:|...|..::..::   .||          .|..|:...|     |...||...:.|:
 Frog   247 AQILPNPDGTYQIRVSVEVTPE----------EGATYSCHVDHSSLAKPLAVCFEPSDRL 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..47 CDD:465132
Carn_acyltransf 174..753 CDD:459926 58/309 (19%)
mhc1-uba6XP_002938998.1 MHC_I 19..191 CDD:471794 45/239 (19%)
Ig 214..288 CDD:472250 15/83 (18%)
Ig strand B 215..219 CDD:409353 0/3 (0%)
Ig strand C 230..234 CDD:409353 0/3 (0%)
Ig strand E 261..265 CDD:409353 0/3 (0%)
Ig strand F 272..277 CDD:409353 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.