DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment whd and cpt1a

DIOPT Version :9

Sequence 1:NP_001163111.1 Gene:whd / 36109 FlyBaseID:FBgn0261862 Length:782 Species:Drosophila melanogaster
Sequence 2:XP_004913491.2 Gene:cpt1a / 100490391 -ID:- Length:778 Species:Xenopus tropicalis


Alignment Length:786 Identity:389/786 - (49%)
Similarity:524/786 - (66%) Gaps:44/786 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEAHAAVAFSFAITHEGFDINYDHEVLNLVWNSGVRSWKKRLARARNGVRNGVYPAHIQSLWLI 65
            |||||.||||.|.:|.:|.|:...||.|..::.||:.||||:..|.:||:..||:|:. .|.|||
 Frog     1 MAEAHQAVAFQFTVTPDGIDLRLSHEALRQIYLSGLHSWKKKFIRFKNGILTGVFPSS-PSSWLI 64

  Fly    66 SAIAL---------------------GLHFAGYQAPFNLTNRILVHLPSNTINWQVTACFLAALV 109
            ..:.:                     .|...||..|             .|.|  :.:..|....
 Frog    65 VVVGVTSASMYTKVDPSFGIIEKINNALSATGYMTP-------------QTQN--IVSGVLFGTG 114

  Fly   110 VWLSICFTMRYTLKLLLMYKGWMYESRAPGSRVSLPTMLWVAVVRVLSSWNKPGLYSFQGSLPRL 174
            :|:|:..||||:||.||.|.|||:|..   .::|..|.:|:.:|::||. .||.|||||.|||||
 Frog   115 LWVSLIATMRYSLKKLLSYHGWMFEEH---GKLSASTRIWMGMVKLLSG-RKPMLYSFQTSLPRL 175

  Fly   175 PLPSVKDTMTRYLRSVRPLLDDENYTRMERLAKEFEQTIGKKLQWYLILKSWWSTNYVSDWWEEY 239
            |:|.||||:.|||.||:||:|.|.:.|||.|||:|...:|.:|||||.|||||:|||||||||||
 Frog   176 PVPPVKDTVKRYLDSVKPLMDKEKFERMEGLAKDFANNLGPRLQWYLKLKSWWATNYVSDWWEEY 240

  Fly   240 VYLRGRSPLCVNSNFYGTDAIFMNLTDKQAARAANVISLLLNFRRLIEHQELQPIMVQG-MIPLC 303
            :|||||.|:.||||:|..|.:::..|..|||||.|.|..:|.:||.::.:|::||.:.| .:|||
 Frog   241 IYLRGRGPIMVNSNYYAMDFLYVLPTHIQAARAGNAIHAILLYRRKLDREEIKPIQLMGSTVPLC 305

  Fly   304 SWQYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYKMLIYYKGRILRPCELQVQIEEILKG 368
            |.|:||.:||:|:||.|||.|.|.:||.||||.|||.|:|:.:|:.||:|:|.|::.|:::|:..
 Frog   306 SAQWERMYNTSRIPGEETDTIQHVKDSKHIVVYHKGRYFKVWLYHDGRLLKPREIEHQMQKIIDD 370

  Fly   369 KATPVEGEEHLAALTAWNRSKWAEARNTFFSWGVNQTSLRTIESAAFVLSLDDEPFEFDLARP-E 432
            .::|..|||.||||||.:|..||:||..:|:.|.|:.|:..:|.|||.::||:....::...| .
 Frog   371 TSSPQPGEEKLAALTAGDRVPWAKARKAYFANGKNKQSMDAVEKAAFFVTLDETEQGYNKEDPVN 435

  Fly   433 LLDNFGKKLLHGNGYNRWFDKCFTVCVGTNGRVGFNAEHTWSDAAIASHMWENLIVDDLVSDGYD 497
            .||::.|.||||..|:|||||..:..|..||::|.|.||:|:||.|..|:||.::..|.:..||:
 Frog   436 SLDSYAKSLLHGKCYDRWFDKTMSFVVFKNGKMGMNVEHSWADAPIVGHLWEYVMATDKMELGYN 500

  Fly   498 ETGNTKGTPAFQPPTPTRLTWDL-KPCLAQIEEATIDVTKLINEVNLRILVHQDYGKGFMKKCRI 561
            |.|:.||......|.|:||.||: :.|...:||:......|.::|:........:|||.:||.|.
 Frog   501 EDGHCKGDVNGNIPPPSRLQWDIPEECQNVVEESLTVAKALADDVDFHSFPFDSFGKGLIKKSRT 565

  Fly   562 SPDAYIQMALQLAYYRDAGRFSLTYEASMTRLFREGRTETVRPCTIESSAWVKAMQNPNTTNDER 626
            ||||::|::||||:|||..:|.||||||||||||||||||||.|||||..:|.||.:|:.||::|
 Frog   566 SPDAFVQLSLQLAHYRDKEKFCLTYEASMTRLFREGRTETVRSCTIESCDFVLAMSDPSQTNEKR 630

  Fly   627 VKMMQAACDRHQLGYQDAMCGRGIDRHLFCLYVVSKYLEVDSPFLNEVLSEPWRLSTSQTPHGQT 691
            :::.:.|.::||..|:.||.|.||||||||||||||||.||||||.|||||||||||||||..|.
 Frog   631 LQLFKEAAEKHQQMYRLAMTGSGIDRHLFCLYVVSKYLGVDSPFLKEVLSEPWRLSTSQTPQQQV 695

  Fly   692 PKMDLKKHPNCISAGGGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNISQALS 756
            ....|:|.|..:|:||||||||||||||||||.|||||.||||:|.:..:||.|||.::|.||:.
 Frog   696 HLFQLEKFPENVSSGGGFGPVADDGYGVSYIIVGENLINFHISSKFSSPETDSHRFGKHIKQAMI 760

  Fly   757 DIRSMF 762
            ||.::|
 Frog   761 DILALF 766

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
whdNP_001163111.1 CPT_N 1..45 CDD:293093 22/43 (51%)
Carn_acyltransf 171..759 CDD:279140 319/590 (54%)
cpt1aXP_004913491.2 CPT_N 1..47 CDD:406797 23/45 (51%)
Carn_acyltransf 172..762 CDD:395612 318/589 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D228690at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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