DRSC/TRiP Functional Genomics Resources

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Protein Alignment Caf1-105 and chaf1b

DIOPT Version :10

Sequence 1:NP_610589.2 Gene:Caf1-105 / 36107 FlyBaseID:FBgn0033526 Length:747 Species:Drosophila melanogaster
Sequence 2:XP_012813446.1 Gene:chaf1b / 100127620 XenbaseID:XB-GENE-996578 Length:569 Species:Xenopus tropicalis


Alignment Length:635 Identity:249/635 - (39%)
Similarity:337/635 - (53%) Gaps:101/635 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKCKIPEISWHNRDPVLSVDIQQNGLGLRSPTICRLASGGSDAHVLIWYVNRSDDAEGVDVELAA 65
            ||....||:|||::||.|:|.|..     :..|.|:||.|.|..|.:|.:.:|.:.:.: ||..|
 Frog     1 MKVITCEIAWHNKEPVYSLDFQHG-----TDRINRMASAGVDTAVRMWKIEKSPEGKAI-VEFVA 59

  Fly    66 DLSRHQRAVNAVRWSPNGELLASGDDESVVFIWKQKADHEVVNIVDADGCSEQD-----KEVWLT 125
            .|:||.:|||.||:|||||:||||.|::.:.:||.....|    .:|....|||     ||.|..
 Frog    60 SLARHTKAVNVVRFSPNGEILASGGDDAAIVLWKLNEAKE----PEATPFQEQDEPELNKENWTV 120

  Fly   126 LKVLRGHREDIYDLSWAPNSQFLVSGSVDNTAMLWDVHSGKSLAILDDHKGYVQGVAWDPCNQYI 190
            ||.||||.||:||:.|..:|.|:||.||||||::|||..|:.|:|.::||.|||||.|||..|||
 Frog   121 LKTLRGHLEDVYDICWTQDSNFMVSASVDNTAIMWDVTKGQKLSIFNEHKSYVQGVTWDPLGQYI 185

  Fly   191 ATMSTDRQMRIFDANTKRVLHRVSKCVLPVKEDHEMHGKSMRLYQDGTLQTFFRRLCFTPDGKLL 255
            ||:|.||.||::...||||.:.|||.......|.|:  ||.|:|.|.::::|||||.|||||.||
 Frog   186 ATLSCDRIMRVYKTETKRVAYNVSKMASAPGADGEV--KSFRMYHDDSMKSFFRRLTFTPDGSLL 248

  Fly   256 LTPSGITDYDGVVKPINTSYGFSRHDLSKPAFVLPFPKEYAVAVRCSPVLYRLRPY----NAEKN 316
            :||:|..:....|  |||:|.|||.:|.:|...||.|.:..:||||.|:.:.|||.    :.|..
 Frog   249 ITPAGCVESGESV--INTTYVFSRKNLKRPMAHLPCPTKATLAVRCCPIYFELRPTVKDDSGESQ 311

  Fly   317 PP-IISLPYRMIYAVATKNAVFFYDTQQPVPFAIVSNIHYSRLTDLAWSSDGTVLIVSSTDGYCS 380
            |. :|:.||||::|||:::||.||||||..||..|||:||..|:|::|||||..|.:||||||||
 Frog   312 PQGLITQPYRMVFAVASEDAVLFYDTQQLFPFGYVSNVHYHTLSDISWSSDGRFLAISSTDGYCS 376

  Fly   381 LITFEPTELGDCYEDMETVLSVVLKSSENATVLKKKRQKLRKVSLDEPRKPLQEKSKPNTIRRAS 445
            .:|||..|||                                |.|.|...||..|: |.|.|:..
 Frog   377 FVTFEEGELG--------------------------------VPLKEKPVPLIPKT-PATERKIK 408

  Fly   446 EAGITEVGEP----ELDAENDSSTHSVSSNKTNSPKTKASEEEKPTPIAIRRSPRKNSTAPMPIA 506
            :|...:|..|    ||...|.|..||..|...||....||...:.||:    |....|:.|    
 Frog   409 KAQSKKVSSPGSRQELTPSNKSMEHSTPSTPMNSRAAAASGSRECTPV----SSHSLSSTP---- 465

  Fly   507 IRRAPRKPEDKGNSESSKPKDEMEVTHTKTTQVQKTVASPVKRKVSTEAV----PPAETSQPALA 567
                  ..||| .|:..:|:..|    ..|.:......:|..|::|..:|    |.:..|.||.:
 Frog   466 ------NSEDK-KSKGGQPRRIM----LNTLEAWSKPTTPSPRRISLISVKTNSPGSAQSSPAPS 519

  Fly   568 VIP---VFEKEIISSDDK-FESPEKK-------------SRPATPIQVRR 600
            ..|   .....:..|:|. .:|||.|             .:|:|..|..:
 Frog   520 TAPRPQTSPSAVSPSEDAGCKSPESKRLRTEDSPSCSSADKPSTTDQTNK 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Caf1-105NP_610589.2 WD40 <4..377 CDD:441893 183/382 (48%)
WD40 repeat 75..131 CDD:293791 26/60 (43%)
WD40 repeat 136..172 CDD:293791 19/35 (54%)
WD40 repeat 179..213 CDD:293791 20/33 (61%)
WD40 repeat 243..290 CDD:293791 24/46 (52%)
WD40 repeat 358..382 CDD:293791 16/23 (70%)
PHA03247 <472..742 CDD:223021 34/150 (23%)
chaf1bXP_012813446.1 WD40 <13..373 CDD:441893 178/373 (48%)
WD40 repeat 16..63 CDD:293791 17/52 (33%)
WD40 repeat 69..126 CDD:293791 26/60 (43%)
WD40 repeat 131..167 CDD:293791 19/35 (54%)
WD40 repeat 174..229 CDD:293791 29/56 (52%)
CAF-1_p60_C 386..551 CDD:464756 51/216 (24%)

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