DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBPM and VID30

DIOPT Version :9

Sequence 1:NP_001303342.1 Gene:RanBPM / 36102 FlyBaseID:FBgn0262114 Length:1127 Species:Drosophila melanogaster
Sequence 2:NP_011287.1 Gene:VID30 / 852624 SGDID:S000003196 Length:958 Species:Saccharomyces cerevisiae


Alignment Length:935 Identity:194/935 - (20%)
Similarity:329/935 - (35%) Gaps:295/935 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 QELHHIEGLIRHRE---SQNPEEHPPQASLENRETLGREDTNQEPDEPQVRDPEIEPEAEPPPPL 226
            |||  :|.::..||   :.|       .||||       |.|.:.|:....|.:           
Yeast   139 QEL--LEPVLSEREMALNSN-------TSLEN-------DRNDDDDDDDDDDDD----------- 176

  Fly   227 LLEDLDEQDSGSQDLNEQQPPLIIDANAIAETIDANAVERIDDYEDDDEE----VDEEEEVVEDR 287
              :|.|:.|....||..      ::.....:|.|.|..:..|::|:..||    .|.:....:.|
Yeast   177 --DDDDDDDDDESDLES------LEGEVDTDTDDNNEGDGSDNHEEGGEEGSRGADADVSSAQQR 233

  Fly   288 VDRAGEVASVSGAQRLHSVAVLP----------------RYSSASRAPRSSNNNNNNISNHNNNN 336
            .:|   ||.....||..|...:.                :|....::| ||:.::..:|:.|:.|
Yeast   234 AER---VADPWIYQRSRSAINIETESRNLWDTSDKNSGLQYYPPDQSP-SSSFSSPRVSSGNDKN 294

  Fly   337 NNSNSNSLSRRTRHFYSNNGSHFSNDMFP--------------SHNPRSSTQTSSPRVGGRRHHS 387
            :|..:|.|        ||:||...|.|.|              ...|.:|.|.|.          
Yeast   295 DNEATNVL--------SNSGSKKKNSMIPDIYKILGYFLPSRWQAQPNNSLQLSQ---------- 341

  Fly   388 TPAASSNSPQHQGVDPLRLLYPNVNESETPLPRCWSPHDK-CLSIGLSQNNLRVTYKGVGKQHSD 451
                          |.:..|.||      |....:..::: ..|...::|.||.:::..||....
Yeast   342 --------------DGITHLQPN------PDYHSYMTYERSSASSASTRNRLRTSFENSGKVDFA 386

  Fly   452 AASVRTAYPIPSSCGLYYFEVRIIS-----KGRNGYMGIGLT----------------------- 488
            ......:.| .:...::|:|::::|     ...|..:.||..                       
Yeast   387 VTWANKSLP-DNKLTIFYYEIKVLSVTSTESAENSNIVIGYKLVENELMEATTKKSVSRSSVAGS 450

  Fly   489 ------AQQFRMNRLP-------------------------------------GWDKQSYGYHGD 510
                  :.....||:|                                     |:|...:||.|.
Yeast   451 SSSLGGSNNMSSNRVPSTSFTMEGTQRRDYIYEGGVSAMSLNVDGSINKCQKYGFDLNVFGYCGF 515

  Fly   511 DGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDL-PTKLYPTVGLQTP 574
            ||...:|:...:.|...|...|||||.:||::.:.|:||||:.||.||.|| ..:..|.|.|: |
Yeast   516 DGLITNSTEQSKEYAKPFGRDDVIGCGINFIDGSIFFTKNGIHLGNAFTDLNDLEFVPYVALR-P 579

  Fly   575 GEEVDANFG-QEPFKFDKI--VDMMKEMRSNVLRKIDRYPHLLETPENLMNRLVSTYLVHNAFSK 636
            |..:..||| .|.|.||.|  .|..|.:         .|.|:....:  |:  ||.....:..|:
Yeast   580 GNSIKTNFGLNEDFVFDIIGYQDKWKSL---------AYEHICRGRQ--MD--VSIEEFDSDESE 631

  Fly   637 TAEAFNG-----YTNQTFNEDLASIKTRQKIIKLILTGKMSQAIEHTLRSFPGLLENNKNLWFAL 696
            ..|..||     .||  .||||..|...........|.|::.             |.:.||.|.|
Yeast   632 EDETENGPEENKSTN--VNEDLMDIDQEDGAAGNKDTKKLND-------------EKDNNLKFLL 681

  Fly   697 -KCRQFIE-MINGADIENVNNKVTATTQTMPTN----------QTSVIQSTKTFKHSKSGSGNGN 749
             :..:||: .:...|:.|:|| ::....::|..          ...::...|.|........   
Yeast   682 GEDNRFIDGKLVRPDVNNINN-LSVDDGSLPNTLNVMINDYLIHEGLVDVAKGFLKDLQKDA--- 742

  Fly   750 VNINQTQQQNNTAI----PAVIKPQG--GDRPDIKNMLVDDNSNKCVEHDSNSMDVEMEPCQSHS 808
            ||:|....::...|    ..::|.:.  ..|.:::.::.....:||:.:..|.:           
Yeast   743 VNVNGQHSESKDVIRHNERQIMKEERMVKIRQELRYLINKGQISKCINYIDNEI----------- 796

  Fly   809 NGGDSSSNGNASAVRNSLDAIDE-------EMDVSPSSRNCGRVIEKILEFGKELSSMGQQLEKE 866
                      ...::|:|:.:.|       .|....||::...:...||:        ||:|..|
Yeast   797 ----------PDLLKNNLELVFELKLANYLVMIKKSSSKDDDEIENLILK--------GQELSNE 843

  Fly   867 NLMTEEERQMLEDAFS--------LIAYSNPW-SSP---LGWLLCPSRRESVSTTLNSAILESLN 919
            .:...:..|.|.|.||        |:|||||. .:|   .|:|.....:|.:....|:.||..|:
Yeast   844 FIYDTKIPQSLRDRFSGQLSNVSALLAYSNPLVEAPKEISGYLSDEYLQERLFQVSNNTILTFLH 908

  Fly   920 FERRPPLEYLVAHASELIKVIGQHS 944
            .:....||.::::...::..:.:::
Yeast   909 KDSECALENVISNTRAMLSTLLEYN 933

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBPMNP_001303342.1 Extensin_2 55..103 CDD:252669
Involucrin2 137..188 CDD:284425 7/25 (28%)
SPRY_RanBP9_10 442..584 CDD:293966 48/214 (22%)
CLTH 655..938 CDD:287564 59/319 (18%)
CTLH 655..711 CDD:128914 11/57 (19%)
CRA 846..944 CDD:214806 27/109 (25%)
VID30NP_011287.1 SPRY_RanBP_like 386..588 CDD:293943 44/203 (22%)
CTLH 769..826 CDD:128914 10/77 (13%)
CRA 828..935 CDD:214806 27/114 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344187
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1477
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001704
OrthoInspector 1 1.000 - - oto98992
orthoMCL 1 0.900 - - OOG6_102407
Panther 1 1.100 - - LDO PTHR12864
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4441
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.820

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