DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBPM and ranbp10

DIOPT Version :9

Sequence 1:NP_001303342.1 Gene:RanBPM / 36102 FlyBaseID:FBgn0262114 Length:1127 Species:Drosophila melanogaster
Sequence 2:XP_005159199.1 Gene:ranbp10 / 793293 ZFINID:ZDB-GENE-070705-86 Length:609 Species:Danio rerio


Alignment Length:613 Identity:279/613 - (45%)
Similarity:369/613 - (60%) Gaps:74/613 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 NSPQHQGVDPLRLLYPNVNESETPLPRCWSPHDKCLSIGLSQNNLRVTYKGVGKQHSDAASVRTA 458
            |..:|:..:.|:.|||.|||.||||||.|||.||...||||||||||.|||.||.|.||||||..
Zfish    17 NYQEHELNERLKRLYPAVNEEETPLPRSWSPKDKYSYIGLSQNNLRVHYKGHGKNHKDAASVRAT 81

  Fly   459 YPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQT 523
            :|||::||:|||||:|:||||:|||||||:||...|||||||||.|||||||||:||.|||.||.
Zfish    82 HPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQP 146

  Fly   524 YGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTPGEEVDANFGQEPFK 588
            ||||||||||||||||.:||||||||||..||:||.|||..||||||||||||.|||||||:||.
Zfish   147 YGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLYPTVGLQTPGEIVDANFGQQPFV 211

  Fly   589 FDKIVDMMKEMRSNVLRKIDRYP--HLLETPENLMNRLVSTYLVHNAFSKTAEAFNGYTNQTFNE 651
            || |.|.|.|.|:.:...|.|:|  ..|...:.::..:||:||||:.:..||.||...|.....|
Zfish   212 FD-IEDYMSEWRAKIHSMIARFPIGERLGDWQAVLQNMVSSYLVHHGYCATAMAFARATETMIQE 275

  Fly   652 DLASIKTRQKIIKLILTGKMSQAIEHTLRSFPGLLENNKNLWFALKCRQFIEMINGADIE----- 711
            |..|||.||:|.||:|.|::.:||:.|.:.:|||||:|.||.|.||||||:||:||.|.|     
Zfish   276 DQTSIKNRQRIQKLVLAGRVGEAIDATQQLYPGLLEHNPNLLFMLKCRQFVEMVNGTDSEVRCFS 340

  Fly   712 --------------NVNNKVTATTQTM-------PTNQTSVIQSTKTFKHSK----------SGS 745
                          |::.:..||...:       ||....|....|...|:|          ..|
Zfish   341 VRSPKSQDSYPGSPNMSPRHGATNPHLHSTGADSPTCSNGVTPPNKNKSHNKYTGISSASSSPSS 405

  Fly   746 GNGNVNINQTQQQNNTAIPAVIKPQGGDRPDIKNMLVDDNSNKCVEHDSNSMDVEMEPCQSHSNG 810
            ...:||.:::...::|                |:......||:  |...:.|::|.|   .:|||
Zfish   406 SPSSVNYSESNSTDST----------------KSQPHSATSNQ--ETSDSEMEIEAE---HYSNG 449

  Fly   811 GDSSS----NGNASAVRNSLDAIDEEM------DVSPSSRNCG---RVIEKILEFGKELSSMGQQ 862
            ...||    ||.... :..|.|.|..:      |...|.:.||   ...|::::||:||.::.:|
Zfish   450 VTESSTRIMNGTYKH-QEILQADDNSVGNGVADDTCSSRQLCGGNQAATERMIQFGRELQTLSEQ 513

  Fly   863 LEKENLMTEEERQMLEDAFSLIAYSNPWSSPLGWLLCPSRRESVSTTLNSAILESLNFERRPPLE 927
            |.::.......::||:|||||:|||:||:.|:|..|.|.:||::.:.||||||||.|..::|||.
Zfish   514 LCRQYGKNATHKKMLQDAFSLLAYSDPWNCPVGQQLDPMQREAICSALNSAILESQNLPKQPPLM 578

  Fly   928 YLVAHASELIKVIGQHSLGEDAFITIDD 955
            ..:..|:|.::::.:...|..:|..:|:
Zfish   579 LALGQATECVQLMARVRSGSCSFARVDN 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBPMNP_001303342.1 Extensin_2 55..103 CDD:252669
Involucrin2 137..188 CDD:284425
SPRY_RanBP9_10 442..584 CDD:293966 111/141 (79%)
CLTH 655..938 CDD:287564 107/331 (32%)
CTLH 655..711 CDD:128914 33/55 (60%)
CRA 846..944 CDD:214806 39/97 (40%)
ranbp10XP_005159199.1 SPRY_RanBP9_10 65..207 CDD:293966 111/141 (79%)
LisH 245..270 CDD:128913 10/24 (42%)
CTLH 279..335 CDD:128914 33/55 (60%)
CLTH 279..>333 CDD:287564 32/53 (60%)
CRA 496..593 CDD:214806 39/96 (41%)
CLTH <521..581 CDD:287564 30/59 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592481
Domainoid 1 1.000 215 1.000 Domainoid score I2662
eggNOG 1 0.900 - - E1_KOG1477
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 514 1.000 Inparanoid score I1265
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106989at2759
OrthoFinder 1 1.000 - - FOG0001704
OrthoInspector 1 1.000 - - otm24362
orthoMCL 1 0.900 - - OOG6_102407
Panther 1 1.100 - - O PTHR12864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4441
SonicParanoid 1 1.000 - - X1611
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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