DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBPM and ranbp9

DIOPT Version :9

Sequence 1:NP_001303342.1 Gene:RanBPM / 36102 FlyBaseID:FBgn0262114 Length:1127 Species:Drosophila melanogaster
Sequence 2:NP_001037977.1 Gene:ranbp9 / 733762 XenbaseID:XB-GENE-494852 Length:548 Species:Xenopus tropicalis


Alignment Length:575 Identity:282/575 - (49%)
Similarity:366/575 - (63%) Gaps:56/575 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   403 PLRLLYPNVNESETPLPRCWSPHDKCLSIGLSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGL 467
            ||..|....:.|..|.||.|||.|||..:|||..||||.|||.||...||||||:.:|||::||:
 Frog     5 PLHGLSSGGHLSRDPPPRSWSPRDKCSYLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGI 69

  Fly   468 YYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGD 532
            :||||:||||||:|||||||:.|...::|||||||.|||||||||:||.|||.||.|||||||||
 Frog    70 FYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGD 134

  Fly   533 VIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMMK 597
            |||||||.::|||||||||..|||||.|||..||||||||||||.|||||||.||.|| |.|.::
 Frog   135 VIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFD-IEDYIR 198

  Fly   598 EMRSNVLRKIDRYPHLLETPENLMNRLVSTYLVHNAFSKTAEAFNGYTNQTFNEDLASIKTRQKI 662
            |.|:.:..:|:|:|...|. ::::.|:||:||||:.:..|||||...|:||..|:|||||.||:|
 Frog   199 EWRTKIQAQIERFPVGGEW-QSMIQRMVSSYLVHHGYCSTAEAFAKSTDQTVQEELASIKNRQRI 262

  Fly   663 IKLILTGKMSQAIEHTLRSFPGLLENNKNLWFALKCRQFIEMINGADIE-----NVNNKVTATTQ 722
            .||:|:|:|.:|||.|.:.:|.|||.|.||.|.||.||||||:||.|.|     |.:.|......
 Frog   263 QKLVLSGRMGEAIETTQQLYPSLLERNPNLLFTLKVRQFIEMVNGTDSEVRCLGNRSLKSLDGCS 327

  Fly   723 TMPTNQTSVIQSTK---TFKHSKSGSGNGNV----NINQTQQQNNTAIPAVIKPQGGDRPDIKNM 780
            ...:|.::.|.|.|   |..||||.|.|.||    :||.|.                        
 Frog   328 GSDSNCSNGIISNKAHQTHCHSKSQSSNLNVTELNSINMTM------------------------ 368

  Fly   781 LVDDNSNKCVEHDSNSMDVEMEPCQSHSNG-GDSSSNG---NASAVRNSLDAIDEEMDVSPS--- 838
                 |::...:.||  ||||| ...:||| ..|:|||   .:|.....|:..|.||:|..|   
 Frog   369 -----SHQLNSYSSN--DVEME-TDHYSNGFSASTSNGFLNGSSRHEPELEECDTEMEVDTSHGR 425

  Fly   839 SRNCG---RVIEKILEFGKELSSMGQQLEKENLMTEEERQMLEDAFSLIAYSNPWSSPLGWLLCP 900
            .:.||   ..:|:::.||:||.:|.:||.:|.......:.||:|||||:|||:||:||:|:.|.|
 Frog   426 RQLCGGSQAAVERMICFGRELQAMSEQLRRERGKNATNKNMLKDAFSLLAYSDPWNSPVGYQLDP 490

  Fly   901 SRRESVSTTLNSAILESLNFERRPPLEYLVAHASELIKVIGQHSLGEDAFITIDD 955
            .:||.|.::||||||:..|..::|||...:..||:.::::.|..:|..||..:.|
 Frog   491 IQREHVCSSLNSAILDIHNLPKQPPLSLALEQASQCLEMMAQCGIGSCAFARVAD 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBPMNP_001303342.1 Extensin_2 55..103 CDD:252669
Involucrin2 137..188 CDD:284425
SPRY_RanBP9_10 442..584 CDD:293966 107/141 (76%)
CLTH 655..938 CDD:287564 118/304 (39%)
CTLH 655..711 CDD:128914 34/55 (62%)
CRA 846..944 CDD:214806 42/97 (43%)
ranbp9NP_001037977.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26 8/20 (40%)
SPRY_RanBP9_10 44..186 CDD:293966 107/141 (76%)
LisH 216..249 CDD:128913 15/33 (45%)
CLTH 255..527 CDD:371161 118/303 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 207 1.000 Domainoid score I2822
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H38057
Inparanoid 1 1.050 498 1.000 Inparanoid score I1342
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106989at2759
OrthoFinder 1 1.000 - - FOG0001704
OrthoInspector 1 1.000 - - oto102322
Panther 1 1.100 - - LDO PTHR12864
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4441
SonicParanoid 1 1.000 - - X1611
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.100

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