DRSC/TRiP Functional Genomics Resources

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Protein Alignment RanBPM and Ranbp10

DIOPT Version :9

Sequence 1:NP_001303342.1 Gene:RanBPM / 36102 FlyBaseID:FBgn0262114 Length:1127 Species:Drosophila melanogaster
Sequence 2:XP_017456806.2 Gene:Ranbp10 / 361396 RGDID:1311587 Length:734 Species:Rattus norvegicus


Alignment Length:657 Identity:295/657 - (44%)
Similarity:378/657 - (57%) Gaps:94/657 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 RSSTQTSSPRVGGRRHHSTPAASSN----SPQHQGVD-PLRLLYPNVNESETPLPRCWSPHDKCL 429
            :.:..|:.|..|..:...:....|.    ||..|.:. .|:.|||.||:.||||||.|||.||..
  Rat    98 KMAAATADPGAGNPQAGDSSGGDSGGGLPSPGEQELSRRLQRLYPAVNQHETPLPRSWSPKDKYN 162

  Fly   430 SIGLSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRM 494
            .|||||.||||.|||.||.|.||||||..:|||::||:|||||:|:||||:|||||||:||...|
  Rat   163 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNM 227

  Fly   495 NRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFR 559
            ||||||||.|||||||||:||.|||.||.||||||||||||||||.:|.||||||||..|||||.
  Rat   228 NRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFT 292

  Fly   560 DLPTKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMMKEMRSNVLRKIDRYP---HLLETPENLM 621
            |||..||||||||||||.|||||||:||.|| |.|.|:|.|:.|...:..:|   .|.|....|.
  Rat   293 DLPANLYPTVGLQTPGEIVDANFGQQPFLFD-IEDYMREWRTKVQGTVHGFPISARLGEWQAVLQ 356

  Fly   622 NRLVSTYLVHNAFSKTAEAFNGYTNQTFNEDLASIKTRQKIIKLILTGKMSQAIEHTLRSFPGLL 686
            | :||:||||:.:..||.||...|.....|:.||||.||||.||:|.|::.:|||.|.|.:||||
  Rat   357 N-MVSSYLVHHGYCATATAFARMTETPIQEEQASIKNRQKIQKLVLEGRVGEAIETTQRFYPGLL 420

  Fly   687 ENNKNLWFALKCRQFIEMINGADIENVNNKVTATTQTMPTNQTSV-------------------- 731
            |::.||.|.||||||:||:||.|.|     |.:.:...|.:|.|.                    
  Rat   421 EHSPNLLFMLKCRQFVEMVNGTDSE-----VRSLSSRSPKSQDSYPGSPSLSPRHGPSSSHIHNT 480

  Fly   732 ----------IQSTKTFK-HSK--------------SGSGNGNVNINQ--------TQQQNNTAI 763
                      :.|||..: |||              |.|...:||.::        :|..::|:.
  Rat   481 GADSPSCSNGVASTKNKQNHSKYPAPSSSSSSSSSSSSSSPSSVNYSESNSTDSTKSQPHSSTSN 545

  Fly   764 PAVIKPQGGDRPDIKNMLVDDNSNKCVEHDSNSMDVEMEPCQSHSNG---GDSSSNGNASAVRNS 825
            ........||...:..:|          |..:.|::|.|   .:.||   ..|:...|.:...:.
  Rat   546 QETSGQPQGDPTRVSTLL----------HSDSEMEMEAE---HYPNGVLASVSTRIVNGAYKHDD 597

  Fly   826 LDAIDEEMDVS-PSSRNCG---RVIEKILEFGKELSSMGQQLEKE---NLMTEEERQMLEDAFSL 883
            |...:..||.. |..:.||   ...|:|:.||:||.::.:||.:|   ||:..|   ||:|||||
  Rat   598 LQTDESSMDDGHPRRQLCGGNQAATERIILFGRELQALSEQLGREYGKNLVHTE---MLQDAFSL 659

  Fly   884 IAYSNPWSSPLGWLLCPSRRESVSTTLNSAILESLNFERRPPLEYLVAHASELIKVIGQHSLGED 948
            :|||:|||.|:|..|.|.:||.|...||||||||.|..::|||...:..|||.::::.:..||..
  Rat   660 LAYSDPWSCPVGHQLDPIQREPVCAALNSAILESQNLPKQPPLMLALGQASECLRLMARAGLGSC 724

  Fly   949 AFITIDD 955
            :|..:||
  Rat   725 SFARVDD 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RanBPMNP_001303342.1 Extensin_2 55..103 CDD:252669
Involucrin2 137..188 CDD:284425
SPRY_RanBP9_10 442..584 CDD:293966 111/141 (79%)
CLTH 655..938 CDD:287564 116/345 (34%)
CTLH 655..711 CDD:128914 35/55 (64%)
CRA 846..944 CDD:214806 47/100 (47%)
Ranbp10XP_017456806.2 SPRY_RanBP9_10 175..317 CDD:293966 111/141 (79%)
LisH 355..382 CDD:128913 13/27 (48%)
CLTH 389..>443 CDD:402305 34/53 (64%)
CRA 621..718 CDD:214806 47/99 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350752
Domainoid 1 1.000 214 1.000 Domainoid score I2651
eggNOG 1 0.900 - - E1_KOG1477
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 500 1.000 Inparanoid score I1310
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106989at2759
OrthoFinder 1 1.000 - - FOG0001704
OrthoInspector 1 1.000 - - otm44478
orthoMCL 1 0.900 - - OOG6_102407
Panther 1 1.100 - - O PTHR12864
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1611
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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