DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ndg and yl

DIOPT Version :10

Sequence 1:NP_610575.1 Gene:Ndg / 36089 FlyBaseID:FBgn0026403 Length:1350 Species:Drosophila melanogaster
Sequence 2:NP_996433.1 Gene:yl / 32367 FlyBaseID:FBgn0004649 Length:1984 Species:Drosophila melanogaster


Alignment Length:700 Identity:176/700 - (25%)
Similarity:274/700 - (39%) Gaps:138/700 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   702 SKDADCYQGRCTCHEGFDGDGYTCTNIC-GHGEVWENGRCEPLLLERHDVDPLCDALGECRCPYG 765
            |.|..|..|:..|.   ||.......:| |.|:..::.         .::|  || ...||.|:.
  Fly    85 SADTRCDAGQFQCR---DGGCILQAKMCDGRGDCKDSS---------DELD--CD-YRLCRPPHW 134

  Fly   766 YELSEDSQRCTYVQEFDGERNADLIPCDVDENCHINATCNWYGQELRHICTCQPGFR-GD----- 824
            :..::....|...:          :.|:..:||.        |.|....|..:|||| ||     
  Fly   135 FPCAQPHGACLAAE----------LMCNGIDNCP--------GGEDELNCPVRPGFRFGDTAHRM 181

  Fly   825 ------GYNCDPISDDSCAIRPDICDVHADCVYEEHLGKSECQCQAGYTGNGFNCQLAAECQSAE 883
                  .:.|.  .|.:|.....:||...||.     .||:               ..|.|:.||
  Fly   182 RSCSKYEFMCQ--QDRTCIPIDFMCDGRPDCT-----DKSD---------------EVAGCKQAE 224

  Fly   884 -HC-GENAFCDDGVCRCQADF-------------ERDVSDRCVPAGRCGSVFCGSNAICKWDSAE 933
             .| ||...|.:|.|..:..:             ||...:.|.|  :.|...|.:...|...|..
  Fly   225 ITCPGEGHLCANGRCLRRKQWVCDGVDDCGDGSDERGCLNLCEP--QKGKFLCRNRETCLTLSEV 287

  Fly   934 GVQYCDCLDGYQGDALTGCTSKPLSCHVLNNCGIHATCEPTEDPAN-YECQCIAGFKGDGY--VC 995
            ...:.||.||  .|....|.||| .|.. ..|.:.|.|...  ||: .||.|..||:...:  .|
  Fly   288 CDGHSDCSDG--SDETDLCHSKP-DCDA-KKCALGAKCHMM--PASGAECFCPKGFRLAKFEDKC 346

  Fly   996 IEEQNCLNNPTLCDMNAQCRSTNSGLVCVCNQGFF--GNGSLCQE---RQHQDSDFLIVSQGVMI 1055
            .:...|.....||...  |.:|:.|..|||:.|:.  .:...|:.   ...:....|:.:..:.|
  Fly   347 EDVDECKEQDDLCSQG--CENTSGGYRCVCDAGYLLDKDNRTCRAVVYGSKEQQPLLLYTTQMTI 409

  Fly  1056 ARVPLNGRNVRPISVAQMAIGLDKDCVEG------RVYWGDI--STKKIVSTKYDGTDLRPFITT 1112
            ..:.|...|||. .|.|:|..|.|  |.|      .:||.:|  ..:.||....||::....:|:
  Fly   410 MGMHLREDNVRN-HVYQVAGNLSK--VIGVAYDGSHIYWTNIQNEAESIVKANGDGSNAEILLTS 471

  Fly  1113 DIESPEGIAIDVISRRLYWADSAKDTIEVASLDDPSLRAVIINKQLVNPRGIAVDPYREKLFWSD 1177
            .:::||.:|:|.:::.:|::|:....|.|.|.|..:. ||::.:.:..||.:||.|.:..:||:|
  Fly   472 GLDAPEDLAVDWLTQNIYFSDNIMRHIAVCSNDGLNC-AVLVTQDVHQPRSLAVWPQKGLMFWTD 535

  Fly  1178 WDRESPKIEMSNLDGTGRELLLGKDDVTLPNSLVVLENSGEVCYADAGTKKVECIEPQNRQIRTI 1242
            |. |.|.|..:::||: |...:..|::..||.:.:..:...:.:.||....|:.:.|.....||:
  Fly   536 WG-EKPMIGRASMDGS-RSRPIVSDNIEWPNGIALDMHQQRIYWVDAKLGSVQTVRPDGTGRRTV 598

  Fly  1243 -SNELSYPFGITFTHDQFYWTDWTTKKVEIVDSLGARQTPIQPPFFGSHKMYG--MTVVEQH--- 1301
             ...|.:|:|:....||.||:||.||.|........:          .|::..  .|:...|   
  Fly   599 LDGMLKHPYGLAIFEDQLYWSDWATKSVHACHKFSGK----------DHRILAKDRTIYAVHIYH 653

  Fly  1302 -CPQYQSPCQISNGGCTDSRLCLVNRQAPSGKSCKCTSASTGCTVLAPGY 1350
             ..|..||....|..|  |.|||:......|.||.|.....    |||.:
  Fly   654 PAKQPNSPHGCENATC--SHLCLLAEPEIGGHSCACPDGMR----LAPDH 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NdgNP_610575.1 NIDO 108..262 CDD:214712
EGF_3 285..320 CDD:463759
G2F 322..549 CDD:214774
EGF_CA 591..622 CDD:429571
EGF_3 797..828 CDD:463759 11/42 (26%)
EGF_3 836..873 CDD:463759 7/36 (19%)
EGF_3 963..995 CDD:463759 10/34 (29%)
EGF_3 1001..1036 CDD:463759 10/36 (28%)
NHL 1074..>1254 CDD:302697 52/188 (28%)
NHL repeat 1074..1112 CDD:271320 12/45 (27%)
LY 1107..1145 CDD:214531 10/37 (27%)
NHL repeat 1117..1156 CDD:271320 12/38 (32%)
LY 1152..1195 CDD:214531 15/42 (36%)
NHL repeat 1161..1202 CDD:271320 15/40 (38%)
NHL repeat 1210..1244 CDD:271320 6/34 (18%)
ylNP_996433.1 LDLa 90..124 CDD:238060 9/47 (19%)
LDLa 131..166 CDD:238060 7/52 (13%)
LDLa 184..216 CDD:238060 9/53 (17%)
LDLa 227..262 CDD:238060 8/34 (24%)
LDLa 271..302 CDD:238060 9/32 (28%)
FXa_inhibition 352..387 CDD:464251 10/36 (28%)
Ldl_recept_b 442..483 CDD:459654 11/40 (28%)
LY 466..508 CDD:214531 11/41 (27%)
Ldl_recept_b 529..569 CDD:459654 13/41 (32%)
LY 553..595 CDD:214531 7/41 (17%)
LY 596..637 CDD:214531 14/50 (28%)
FXa_inhibition 669..700 CDD:464251 12/34 (35%)
LY 774..815 CDD:214531
LDLa 1032..1062 CDD:238060
LDLa 1074..1109 CDD:238060
LDLa 1118..1152 CDD:238060
LDLa 1157..1189 CDD:197566
LDLa 1198..1232 CDD:238060
LDLa 1243..1279 CDD:238060
LDLa 1283..1318 CDD:238060
LDLa 1340..1371 CDD:197566
FXa_inhibition 1388..1416 CDD:464251
EGF_CA 1418..1452 CDD:214542
Blue background indicates that the domain is not in the aligned region.

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