DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAP and YSC84

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:NP_011880.1 Gene:YSC84 / 856409 SGDID:S000001058 Length:468 Species:Saccharomyces cerevisiae


Alignment Length:383 Identity:85/383 - (22%)
Similarity:139/383 - (36%) Gaps:96/383 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  2059 LNQDEKL-----YGTMP---NPIKSAQNSYKNQPGRIENYTTGHSSVSEKEKKEWWDEVMDIFNG 2115
            ||.:|.:     :||:.   |...||....::........|.|.|:|....|.:      .:|.|
Yeast   107 LNSEEAVRSFSEFGTITLGGNVSVSAGPLGRSAEAAASASTGGVSAVFAYSKSK------GLFAG 165

  Fly  2116 -NLEQSKLSPLYTEGNLSRALAKESGY----TSDSNLVFRKKEVPVSSPLSPVEQKQAYKSLQAG 2175
             ::|.|.:        |.|..|....|    ||...|..|.|..|.:.||..:.:.:|:...:..
Yeast   166 VSVEGSAI--------LERREANRKFYGDNCTSKMILSGRVKVPPAADPLLRILESRAFNFTRHD 222

  Fly  2176 GEPPLLG---------------FRKPAPEKPRDLDPNAP-PIPPQPPVKGL-----SSYDFPYST 2219
            .:....|               :....|:.....|.::. |.......:|:     |.||..|..
Yeast   223 HDDNASGDDFYDDGQYSDNTSHYYDDIPDSFDSTDESSTRPNTRSSRRRGMSLGSRSRYDDDYDD 287

  Fly  2220 D---------TVDGSDVNIHF-KTPIRHEQR--------------QNLSEEELAIRQAE-----H 2255
            |         ..|..|.:..: ::|.|:..|              ....|::|..|..|     |
Yeast   288 DGYGRGRGYGDFDSEDEDYDYGRSPNRNSSRNRGPQIDRGTKPRANTRWEDDLYDRDTEYSRPNH 352

  Fly  2256 MQKLYHEER--RRKYLQELQDMNSRRHTDNFTPSQKSPIALNRYDDFPTDVTLKSLVGPKT---- 2314
            ..:.|...|  ||.|.:|      |.::....|:.  |..::..||....::...|....|    
Yeast   353 SGRDYDNTRGNRRGYGRE------RGYSLGHGPTH--PSNMSNVDDLSHKMSKTGLGNESTATNS 409

  Fly  2315 ---VARALFNFQGQTSKELSFRKGDTIYIRRQIDA--NWYEGEHNAMIGLLPASYVEI 2367
               .|.||:||.|:...:|:|:|||.|.|.::.|:  :|:.|..|...|:.||:||.:
Yeast   410 ATPTAVALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVRV 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404
SH3_Sorbs_1 2315..2367 CDD:212715 22/53 (42%)
SH3_Sorbs_2 2384..2436 CDD:212716
SH3_Sorbs_3 2514..2567 CDD:212714
YSC84NP_011880.1 SYLF 1..219 CDD:225482 30/125 (24%)
SH3_Ysc84p_like 413..467 CDD:212776 22/53 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46655
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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