DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAP and RVS167

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:NP_010676.1 Gene:RVS167 / 851996 SGDID:S000002796 Length:482 Species:Saccharomyces cerevisiae


Alignment Length:649 Identity:123/649 - (18%)
Similarity:196/649 - (30%) Gaps:223/649 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1759 PRHLREFAKFSTSEQLPDGAQMERHEEQERREEATDNAHSSATKKTSIVKTYKVSRLPPSVQGEF 1823
            |:..|:  ||...||..|..    :|:.|||.:..:    ..|||.|    .:..|...:|.|  
Yeast    14 PQSFRQ--KFKMGEQTEDPV----YEDAERRFQELE----QETKKLS----EESKRYSTAVNG-- 62

  Fly  1824 PGQFSGGNRGRLYRERSQTARLVSHNIPLELTSNHSSSPDSDFNPGCGSSPAPGSSTQSSIPSLV 1888
                                 :::|.|      ..:.|.:..|.|..|....|.::.....|..:
Yeast    63 ---------------------MLTHQI------GFAKSMEEIFKPISGKMSDPNATIPEDNPQGI 100

  Fly  1889 QSPTP--APPPPI-EPLNPSSSTAGGILGTALLLGLSLLTAWNKFIYK---------------VK 1935
            ::...  |....: |.|.|..:.....:.|.....|.::|...|...|               .|
Yeast   101 EASEQYRAIVAELQETLKPDLALVEEKIVTPCQELLKIITYIRKMATKRNHKKLDLDRHLNTYNK 165

  Fly  1936 HEYMSEPETGSDRPR-----KMAQLGRRQYDGIGPVTNDGMPIILRSEVKEPHQHEWYKRLYQTI 1995
            ||...|| |..|..|     ...::.:::||....:....:||:...|.      |:.|.|:.:.
Yeast   166 HEKKKEP-TAKDEERLYKAQAQVEVAQQEYDYYNDLLKTQLPILFSLEA------EFVKPLFVSF 223

  Fly  1996 H-KQKNGDDFVIRYKCPRARPSYKSNGYVSEPEPNYDSDYSTVRYRTQNPHRVQSVSSAVNVRNL 2059
            : .|.|                                    :.|...|  |:|.:.  :...:|
Yeast   224 YFMQLN------------------------------------IFYTLYN--RLQDMK--IPYFDL 248

  Fly  2060 NQDEKLYGTMPNPIKSAQNSYKNQPGRIENYTTGHSSVSEKEKKEWWDEVMDIFNGNLEQSKLSP 2124
            |.|             ...||..:.|.:|..|                :.:.|.:..|..||...
Yeast   249 NSD-------------IVESYIAKKGNVEEQT----------------DALTITHFKLGYSKAKL 284

  Fly  2125 LYTEGNLSRALAKESGYTSDSNLVFRKKEVPVSSPLSPVEQKQAYKSLQAGGEPPLLGFRKPAPE 2189
            ..|......|.|:.|               |||...|.|.....|....|....| .|:...|. 
Yeast   285 EMTRRKYGVATAEGS---------------PVSGASSGVGYGAGYDPATATSPTP-TGYGYGAA- 332

  Fly  2190 KPRDLDPNAPPIPPQPPVKGLSSYDFPYST----------DTVDGSDVNIHFKTPIRHEQRQNLS 2244
                    ||....||..:        |.|          .|..|:.......|..::...|:..
Yeast   333 --------APSYAAQPAAQ--------YGTAAAVGTAAAVGTAAGAAAGAVPGTYPQYAAAQSPP 381

  Fly  2245 EEELAIRQAEHMQKLYHEERRRKYLQELQDMNSRRHTDNFTPSQKSPIALNRYDDFPTDVTLKSL 2309
            ...|..:|:...|:                        ...|:..:|:.      .|...|..:.
Yeast   382 LTGLGFQQSPQQQQ------------------------GPPPAYSNPLT------SPVAGTPAAA 416

  Fly  2310 V----GPKTVARALFNFQGQTSKELSFRKGDTI-YIRRQIDAN-WYEGEHNAMIGLLPASYVEI 2367
            |    |.:||. ||:::|.|.:.:|||..|..| .::|..|.| |:.|.:|...|:.|.:||::
Yeast   417 VAAAPGVETVT-ALYDYQAQAAGDLSFPAGAVIEIVQRTPDVNEWWTGRYNGQQGVFPGNYVQL 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404 10/44 (23%)
SH3_Sorbs_1 2315..2367 CDD:212715 20/53 (38%)
SH3_Sorbs_2 2384..2436 CDD:212716
SH3_Sorbs_3 2514..2567 CDD:212714
RVS167NP_010676.1 BAR_Rvs167p 29..245 CDD:153283 51/303 (17%)
SH3 425..478 CDD:418401 20/53 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46655
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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