DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAP and Sorbs1

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:XP_038950965.1 Gene:Sorbs1 / 686098 RGDID:1586598 Length:2046 Species:Rattus norvegicus


Alignment Length:2335 Identity:488/2335 - (20%)
Similarity:747/2335 - (31%) Gaps:813/2335 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   672 SRLIARPDDEMSSTSTTTADRSET--EAETETETEREGEQSRESTPVNANPTLASSQSSLLSAAT 734
            |.|:..||  |..|...|...:.|  .:.:..||......|.:.:|.:.|      :|.|     
  Rat    81 SGLVLPPD--MDPTKICTGKGTVTLRASSSYRETPSSSPVSPQESPKHEN------KSGL----- 132

  Fly   735 PTPTPTPTPADREQLAKDTNVSGGSTVSFGAASPLAATREEFVRN---MDKVRELIEMTRREQEQ 796
               .|....||..:|:...:.:|.:     ..|||||.....|..   .||              
  Rat   133 ---EPEDHSADEWKLSSSADANGNA-----QPSPLAAKGYRSVHPSLLADK-------------- 175

  Fly   797 GELPRSPSPPPVPPPPASVPPYSPESSSFHLASLQLKRQESNDSHCSDSTTHSQCTAINLASPPP 861
               |:..|||.:|         .|:...|...|..:.|...:              ::.::||.|
  Rat   176 ---PQFLSPPRLP---------FPQEDGFAWQSPTIHRNYKD--------------SLYMSSPKP 214

  Fly   862 PPTAQPPTPPLRQKPAPPPVPQPVSPPAPPTPQSEPELSVADSVANANADVDADADTDTEAIKKL 926
               ..||:.|.:|.|:.||   |:|.| |....:.|..|.:.|:...:..:|..:......:.. 
  Rat   215 ---YIPPSTPSQQNPSLPP---PISVP-PGARLAPPNASCSGSLLLGSMGLDVPSQPQQHYMGS- 271

  Fly   927 RLLCTEQLASMPYGEQVLEELAS------VAQNIS-DQSQNKMPYPMPQLPHIKELQLNANESKS 984
            ||:.::.::|.|..|.:..:..|      ::.||. ..|:|..|....          :|.::.|
  Rat   272 RLVYSKNVSSNPRHEAIGNKQVSSLYVPCLSNNICWATSENYSPVARD----------SAQDTPS 326

  Fly   985 SSAWLGLPTQSDPKLLVCLSPGQRDLVNNQTQPDDLLDAHQKFVERRGYHELSKAQVLEQDHQQQ 1049
            .:|....|..|.....|..|.|:                                          
  Rat   327 EAAGTQAPAPSHVPGTVTASTGK------------------------------------------ 349

  Fly  1050 QSEMLKTAAMMRELRKSLSPPAPPVPPPPVPVKSAETAAKA---------TAHENAKR------- 1098
                              .|||||..||.:...:.:.|...         .:..:|.|       
  Rat   350 ------------------PPPAPPPDPPKLSFNNHKDAGNRGENPTLGTWASFPDAVRPPRLGPQ 396

  Fly  1099 --DDASEQKQK----IAAC----ESSSLENKPRRA---------ADLGAQQSAEQRQSSSTTTSS 1144
              .|:..||.|    :..|    :::|....|...         .|.|..|....|..:|.....
  Rat   397 VTSDSENQKNKETYLLQPCYPAKDATSSSPAPSEVIVVPLYLVNTDRGQGQEGTARTPASLGPLG 461

  Fly  1145 --HKATTETMSSDTAKFPTLDSMESELARMFPQHKGDIFEEQRKRFSNIEFPSH-QPVSQTKRYS 1206
              |.....|.::....|||||.       ..|.|.      ||:       |.| ||.|      
  Rat   462 CIHTVPATTPAASPLTFPTLDD-------FIPPHL------QRR-------PHHSQPAS------ 500

  Fly  1207 NIETSSYESKKRMENGQVVYDVSTSSHEKKEQGDPPKDQP--VPPVP-------PPPIMSATKLN 1262
                                  :..|.....|..||...|  |||:|       .|.:..|....
  Rat   501 ----------------------ACGSLSPASQTPPPSPPPPLVPPIPEDLHRGLEPDLPGAVSST 543

  Fly  1263 GNTFI----------DGDVAPKNSQPSRESGSGS-GNGTY------EEFRQRAKAAADAFGEQRE 1310
            |:..:          |..|.|..|:||....|.: .|.|.      .|.::|..:.:|...|:|.
  Rat   544 GSPLLNEVSSSHIDTDSQVFPPTSKPSSAYPSTTIVNPTIVLLQHNREQQKRLSSLSDPASERRV 608

  Fly  1311 QQNGLDQDRVFKDFDRLSQQMHAELQSTREKREKSASMYDLSGFTRPASGHPRLDELQQRRHAHM 1375
            .    :||.|....:..|....||.::..:.|....|..|||..:....|.|.            
  Rat   609 G----EQDPVPTPAELTSPIRAAERRAKDDSRRVVRSAQDLSSVSMDEVGIPL------------ 657

  Fly  1376 QELEREIERSAKSRQERMSSVPRQMEATPPRTHEIPIELEPRSRRAESLCNLNEPPPRPHTTVGH 1440
                |..|||....:.....:.:....||......|....|.....:.    |.....|:|..  
  Rat   658 ----RNTERSKDWYKTMFKQIHKLNRDTPEENPYFPTYKFPELPEIQQ----NSEEDNPYTPT-- 712

  Fly  1441 YNHPV-------VQDDWSRYANDLGYSENIARPFA---REVEICYQRQNQRTPHCIRAPRLSAST 1495
            |..|.       ..||...::....:||:...|.:   .:.|:.|....:........| |.|.:
  Rat   713 YQFPASTPSPKSEDDDSDLHSPRYSFSEDTKSPLSVPRSKSEMNYIDGEKVVKRSATLP-LPARS 776

  Fly  1496 NDLSSSSQYSYDTFNAYGGRRTHAPMLNQAQQQQRPHYGSCYSMIERDPNPRYISTTSR--RGVS 1558
            :.|.||.:           |....|  ...:...|.:.....|:.|..|....:.|..:  |.:|
  Rat   777 SSLKSSPE-----------RNDWEP--PDKKVDTRKYRAEPKSIYEYQPGKSSVLTNEKMSRDIS 828

  Fly  1559 P--------------------APPPVA----TPQQQQVPPPAYDRQQRRSSLPRELHEQQLKYIL 1599
            |                    .|||..    ||....:.|    |..|:::|.::|:..|     
  Rat   829 PEEIDLKNEPWYKFFSELEFGRPPPKKIWDYTPGDCSILP----RGDRKTNLEKDLNLCQ----- 884

  Fly  1600 SKEEELKFEVERLQQERRRLMEEM-QRAPVLPAPQ-----------------RRESYRPAAKLPT 1646
               .||:.::|:::...:.....: |.:.|.|.|.                 :|||......|.:
  Rat   885 ---AELEADLEKVETVNKSPTAHVPQSSAVSPTPDITSEPPGYIYSSDFHAVKRESDGTPGGLAS 946

  Fly  1647 L-SEDEVFR----------------QQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHS----- 1689
            | :|.::::                ::.:.....|| :|:....| :|..|.:.....|:     
  Rat   947 LENERQIYKSVLEGGDIPLQGLSGLKRPSSSASTKV-DRKGGNAH-MISSSSVHSRTFHTSNALG 1009

  Fly  1690 ---------AVDKATISDEFLDRVKERRHKLSMPADSDWESGAESQPQPAAQSQPESDVEAPPVR 1745
                     :..||.||:....:.|.|   ||.|:     :..:.|......|:.....|...|.
  Rat  1010 PGCKHKKPLSAAKACISEILPSKFKPR---LSAPS-----ALLQEQKSVLLTSEKAQSCENLCVS 1066

  Fly  1746 ILEGQAEANLRQLPRHLREFAKFSTSEQLPDGAQMERHEEQERREEATDNAHSSATKKTSIVKTY 1810
            :.:.:     |.||              |..|..:|....:.||:      :.|.:..|..::.|
  Rat  1067 LNDSK-----RGLP--------------LRVGGSIENLLMRSRRD------YDSKSSSTMSLQEY 1106

  Fly  1811 KVSRLPPSVQGEFPG-QFSGGNRGRLYRERSQTARLVSHNIPLELTSNHSSSPDSDFNPGCGSSP 1874
            ..|...|.......| .||     ..||:..|..|     ..|.|.|..|||. .|.        
  Rat  1107 STSSRRPCPLSRKAGLHFS-----MFYRDMHQINR-----AGLSLGSISSSSV-RDL-------- 1152

  Fly  1875 APGSSTQSSIPSLVQSPTPAPPPPIEPLNPSSSTAGGILGTALLLGLSLLTAWNKFIYKVKHEYM 1939
              .|..:.|..||.:....|.....|.: |..:.:            |.:||:.:.|        
  Rat  1153 --ASHFERSSLSLARGELGASQEGSEHI-PKHTVS------------SRITAFEQLI-------- 1194

  Fly  1940 SEPETGSDRPRKMAQLGRRQYDGIGPVTNDGMPIILRSEVKEPHQHEWYKRLYQTIHKQKNGDDF 2004
                   .|.|.|..|     |..|.::....|::.||.:......|      ..:...|     
  Rat  1195 -------QRSRSMPSL-----DFSGRLSKSPTPVLSRSGLTSARSAE------SLLESTK----- 1236

  Fly  2005 VIRYKCPRARPSYKSNGYVSEPEPNYDSDYSTVRYRTQNPHRVQSVSS--AVNVRNLNQDEK--- 2064
             :|   ||......|.|..|.|..:..:|:: :.:|:..|....|:.|  ..:..|::.|.:   
  Rat  1237 -LR---PREMDGMDSGGVYSSPTCSNMADHA-LSFRSLAPSEPLSICSDELDHCSNISNDSREGS 1296

  Fly  2065 ---LYGTMPNPIKSAQNSYKNQ-PGRIENYTT--GHSSVSEKEKKEWWDEVMDIFNGNLEQSKL- 2122
               ::|..|   |...|..|.. |.....:||  .|...|.:: .:|..:.....|..|....| 
  Rat  1297 GGSVHGDFP---KHRLNKCKGTCPASYTRFTTIRKHEQQSSRQ-PDWRSDSRGDRNSLLRNIYLM 1357

  Fly  2123 SPLYTEGNLSRALAK---------ESGYTSDSNLVFRKKEVP----------VSSPLSP--VEQK 2166
            |||  ...|.:.|.:         .||..:.     :|.::|          ...|:.|  :..:
  Rat  1358 SPL--PFRLKKPLQQHPRQPPHDDSSGCPAG-----QKADLPCQGPQDQPHSAGKPMVPTRLSSR 1415

  Fly  2167 QAYKSLQAGGEPPLLGFRKPAPEKPRDLDPNAPPIPPQPPVKGLSSYDFPYSTDTVDGSDVNIHF 2231
            .....|....||||        ::...|:.....:....||        |||...:|.:: |...
  Rat  1416 HTMARLSHNSEPPL--------DRSAGLEDCTRAVNNGNPV--------PYSDHALDRNN-NPQS 1463

  Fly  2232 KTPIRHEQRQN----------LSEEELAIRQAEHMQKLYHEERRRKYLQELQDMNSRRHTDNFTP 2286
            :....|...::          .|.||...|:.:..:||..::||.|..||..|:.:|||| ...|
  Rat  1464 ELAAAHGDSESPRHFIPADYLESTEEFIRRRHDDKEKLLADQRRLKREQEEADIAARRHT-GVIP 1527

  Fly  2287 SQKSPIALNRYDD-FPTDVTLKSLVG-PKTVARALFNFQGQTSKELSFRKGDTIYIRRQIDANWY 2349
            :....|...|:.| ...|.|.|...| ....|||.|:|:.||.|||..:|||.:||.:|||.|||
  Rat  1528 THHQFITNERFGDLLNIDDTAKRKSGLEMRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWY 1592

  Fly  2350 EGEHNAMIGLLPASYVEIVSRDGARTPSK-RPSE----GQARAKYNFQAQSGIELSLNKGELVTL 2409
            ||||:..:|:.|.:|:|::.......|.| .|.:    |:|.||:||...:.:|:|..|||.:||
  Rat  1593 EGEHHGRVGIFPRTYIELLPPAEKAQPRKLAPVQVLEYGEAIAKFNFNGDTQVEMSFRKGERITL 1657

  Fly  2410 TRRVDGNWFEGKI--ANRKGIFPCSYVEVL-----------TDIGAEDIAARTTTV--------- 2452
            .|:||.||:||:|  .:|:||||.:||:||           .|:......:|:.||         
  Rat  1658 LRQVDENWYEGRIPGTSRQGIFPITYVDVLKRPLVKTPVDYIDLPYSSSPSRSATVSPQCTSHSK 1722

  Fly  2453 ----------------------ITSQ-----------------------------------STTN 2460
                                  |||:                                   .:..
  Rat  1723 LIMPAPSSLPHPRRALSPEMHAITSEWISLTVGVPGRRSLAMTPPLPPLPEASVYDMDRLALSAR 1787

  Fly  2461 LRPNL------------DVLRT------------------------NINNEFNT-LTQNG-AQPP 2487
            .||:|            ..||:                        :||.:... :.|:| :|||
  Rat  1788 ARPSLPLSLPYSSWSDHSTLRSVVSPVALPPPHKACSRAPSAQAPLHINGDGGIHIRQDGFSQPP 1852

  Fly  2488 NG--------------------------------------------------------------- 2489
            .|                                                               
  Rat  1853 LGNSDRVISELSDAFSSQSKRQPWREDGPYDRKAESEAGERCPGGPKISKKSCLKPSDVVRCLSS 1917

  Fly  2490 --ILKETRT-----------------------LHK-----TDALHVDTSSEPLA----------- 2513
              .|.|..|                       ||:     ..|.....|.:|.|           
  Rat  1918 EQRLSEFHTPEDSQSFKPLSSPFPAWEAGPPELHRGVEADRKAAQSGVSQQPQAQQRRLTPDRSQ 1982

  Fly  2514 -------YRALYKYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYVE 2566
                   |:|||.|.|||.|||||.:||:|.|:||||||||||||:||..|||||||||:
  Rat  1983 PSQDLCSYQALYSYVPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTRQFGTFPGNYVK 2042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404 7/43 (16%)
SH3_Sorbs_1 2315..2367 CDD:212715 28/51 (55%)
SH3_Sorbs_2 2384..2436 CDD:212716 27/53 (51%)
SH3_Sorbs_3 2514..2567 CDD:212714 40/53 (75%)
Sorbs1XP_038950965.1 Sorb 643..683 CDD:413404 10/55 (18%)
SH3_Sorbs1_1 1557..1611 CDD:212852 29/53 (55%)
SH3_Sorbs1_2 1631..1688 CDD:212855 29/56 (52%)
SH3_Sorbs1_3 1987..2045 CDD:212849 40/56 (71%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106599
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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