DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAP and ncf2

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:NP_001029119.1 Gene:ncf2 / 619367 XenbaseID:XB-GENE-482959 Length:523 Species:Xenopus tropicalis


Alignment Length:394 Identity:82/394 - (20%)
Similarity:158/394 - (40%) Gaps:83/394 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  2232 KTPIRHEQRQNLSEEEL-------AI-----RQAEHMQKLYHEERRRKYLQELQDMNSRRHTDNF 2284
            |..:||..:...:.|::       |:     |..:..::|..:..::.||.:...:.|....|:|
 Frog   151 KVELRHNTKLEKAMEDILKEKVFAAVKIPKGRIFQPNERLVEQLEKKDYLGKALVVASVVDKDSF 215

  Fly  2285 T---PSQKSPIALNRYDDFPTDVTLKSLVGPKTVARALFNFQGQTSKELSFRKGDTIYIRRQIDA 2346
            :   |.|  |.|.|......|...|::|.|..  .|.||.|..:|::|:....|:.:::.::.|.
 Frog   216 SGFAPLQ--PQASNPPPRPKTPEILRTLQGEP--HRVLFEFNPETAEEMQVLPGNIVFVLKKGDD 276

  Fly  2347 NWYEGEHNAMIGLLPASYVEIV-------SRDGAR-----TPSKRPSEGQARA------------ 2387
            ||.....|...|::|.:|:|.|       .:.|.:     :|:.||.:....|            
 Frog   277 NWATVVFNGKKGIVPCNYLEPVELRFQSAQQTGVQSEELDSPTNRPQQSDVPAPPDATPPQLLKN 341

  Fly  2388 ---KYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRKGIFPCSYVEVLTDIGAEDIAART 2449
               |.:|.|.|  :..|.:.|.|.:...:...:::..:|          :::.:.:...|:    
 Frog   342 TKDKQDFSASS--KQKLQETEAVAVASYLVKVYYKYTVA----------IQISSKLPFADL---- 390

  Fly  2450 TTVITSQSTTNLRPNL----------DVLRTNINNE--FNTLTQNGAQPPNGILKETRTLHKTDA 2502
            .|:|:|:  ..|.|:.          |||....|.|  ::..|.|..:.....::....:.|.:.
 Frog   391 LTLISSK--LQLLPSRMKLSFKEDQDDVLLNEENTEKAWSLATDNCLKLKCTEVQVEEPIIKVEE 453

  Fly  2503 LHVD----TSSEPLAY-RALYKYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPG 2562
            :.|.    .|.:...| .||::|.....::|...:||::.:|....:.|:.|..|  |..|.||.
 Frog   454 VQVQQEIPASDKAETYVTALFEYEATQPEDLPFCKGDIIKILSHVSEDWWEGECQ--GRMGIFPK 516

  Fly  2563 NYVE 2566
            .:.|
 Frog   517 VFTE 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404
SH3_Sorbs_1 2315..2367 CDD:212715 14/51 (27%)
SH3_Sorbs_2 2384..2436 CDD:212716 9/66 (14%)
SH3_Sorbs_3 2514..2567 CDD:212714 16/54 (30%)
ncf2NP_001029119.1 TPR_11 11..67 CDD:290150
TPR repeat 37..65 CDD:276809
TPR_11 41..97 CDD:290150
TPR repeat 70..100 CDD:276809
TPR_11 71..149 CDD:290150
TPR repeat 121..149 CDD:276809
SH3_p67phox_N 245..298 CDD:212804 15/54 (28%)
PB1 365..442 CDD:295447 14/92 (15%)
SH3_p67phox_C 469..521 CDD:212979 16/54 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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