DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAP and sh3rf1

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:NP_001038952.2 Gene:sh3rf1 / 556523 ZFINID:ZDB-GENE-030131-6288 Length:880 Species:Danio rerio


Alignment Length:363 Identity:91/363 - (25%)
Similarity:143/363 - (39%) Gaps:120/363 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  2316 ARALFNFQGQTSKELSFRKGDTIYIRRQIDANWYEGEHNAMIGLLPASYVEIVSRDGARTPSKRP 2380
            |:||:|:.|:...:|.|.|||.|.:|||:|.|||.||...:.|..|.::|:::.      |..:|
Zfish   150 AKALYNYDGKEPGDLKFSKGDIIILRRQVDENWYHGEMGGVHGFFPTNFVQVIK------PLPQP 208

  Fly  2381 SEGQARAKYNFQAQSGIE----LSLNKGELVTLTRRVDGNWFEGKIANRKGIFPCSYVEV----- 2436
            .. |.:|.|:|:.:....    |..:|.:::|:.||||.||.||.:.::.||||.||||.     
Zfish   209 PP-QCKALYDFELKDKEADKDCLPFSKDDILTVIRRVDENWAEGMLGDKIGIFPISYVEFNSAAR 272

  Fly  2437 -LTDI------GAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNG----AQPPN-- 2488
             |.::      |.:.....:::....|:..:.:...:...:...:.|.:||.:.    |.||.  
Zfish   273 QLIELDKPSEGGGDSSEGPSSSSSGPQANGSQKAPGEKKNSKKRHSFTSLTMSHKPCLAPPPQRH 337

  Fly  2489 ---------------------GILKETRTLHKTDALHVDTS------------------------ 2508
                                 |.|....:......:|:.|:                        
Zfish   338 SMEISGPVLISSSNPTAAARIGELSGGLSSSAPSQVHICTTGLIVTPPPSSPVTTATVFTFPPET 402

  Fly  2509 ----------------------------------------------SEPLAYRALYKYRPQNSDE 2527
                                                          ..|..|.|::.|.|:..||
Zfish   403 SYASIPVDALPPPPPPPPQSQSSVVGAAALNAGQRPSPAAGDQSGRQRPTVYVAMFPYSPRKEDE 467

  Fly  2528 LELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYV 2565
            |||.:|::..|||:|.||||.|||..||..|.|||||:
Zfish   468 LELRKGEMFLVLERCQDGWFKGTSMHTGKIGVFPGNYM 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404
SH3_Sorbs_1 2315..2367 CDD:212715 23/50 (46%)
SH3_Sorbs_2 2384..2436 CDD:212716 22/55 (40%)
SH3_Sorbs_3 2514..2567 CDD:212714 29/52 (56%)
sh3rf1NP_001038952.2 RING 24..69 CDD:238093
SH3_SH3RF1_1 148..201 CDD:212860 23/50 (46%)
SH3_SH3RF1_2 211..265 CDD:212863 20/53 (38%)
SH3_SH3RF1_3 453..507 CDD:212859 29/53 (55%)
SH3_SH3RF_C 825..879 CDD:212719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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