DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAP and sh3d19

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:XP_009289295.1 Gene:sh3d19 / 553811 ZFINID:ZDB-GENE-050522-481 Length:963 Species:Danio rerio


Alignment Length:1106 Identity:216/1106 - (19%)
Similarity:360/1106 - (32%) Gaps:372/1106 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1678 RISKIEDEHDHSAVDKATISDEFLDRVKERRHKLSMPADSDWE-----SGAESQPQPAAQSQPES 1737
            |.|...::..:.:|.:...|.:..:|.|..|.::|....|..:     :.|::.|||....:.  
Zfish     5 RCSDGSEDFSNVSVTRRRDSTDRSERSKPERLQISQGPLSSIKAAIKRTSAKALPQPVCSRER-- 67

  Fly  1738 DVEAPPVRILEGQAEA---------------------------NLRQLPRHLREFAKFSTSEQLP 1775
              ..|.:.||..:..|                           ...|||....:..|..|.||:.
Zfish    68 --RRPEITILSAEPFAATWYPVPSGRFSSTAFTTQPVWSENALTSAQLPPSYEQVIKEKTQEQVT 130

  Fly  1776 DGAQMERHEEQERREEATDNAHSSATKKTSIVKTYKVSRLPPSVQGEFPGQFSGGNRGRLYRERS 1840
            ..:...||.........||:...:.|...|..          |:|                 :..
Zfish   131 TPSPSPRHSYTTTIATQTDSLEENVTSPDSCT----------SLQ-----------------QNQ 168

  Fly  1841 QTARLVSHNIPLELTSNHSSSPDSDFNPGCGSSPAPGSSTQSSIPSLVQSPT--------PAPPP 1897
            |.|.||...|          .|.....| |...|....:|:||..:.:..||        |.|.|
Zfish   169 QPAVLVKQPI----------KPPRPTLP-CKPKPLLQETTRSSTSTFISQPTVDQTPIQRPVPQP 222

  Fly  1898 --PIEPLNPSSSTAGGILGTALLL-----GLSLLTAW----NKFIYKVKHEYMSEPETGSDRPRK 1951
              ..:||:||:...|   .|.:.|     .:||:..:    .|::.::.....|||:        
Zfish   223 RTKFKPLSPSNQVTG---QTLIPLQDSCDTISLVETFESHSGKYLKELVDVLSSEPQ-------- 276

  Fly  1952 MAQLGRRQYDGIGPVTNDGMPIILRSE-----VKEPHQHEWYKRLYQTIHKQKNGDDFVIRYKCP 2011
             ::|.       .||.|.|....|.:|     :...|.....:...|....|...::.......|
Zfish   277 -SELS-------NPVNNQGEQTNLTNENQIENMTFHHSDRNIRSRIQAFESQAATENDAASVPFP 333

  Fly  2012 RAR------------PSYKSNGYVSEPEPNYDSDYSTVRYR------TQNPH-----------RV 2047
            |.|            ||......|.:|:....|.:.:..|.      |..|.           |.
Zfish   334 RPRKIGAKPPILAPKPSIAPRPSVIKPKEEPFSQFDSHLYEELDMEPTPAPRPQLFKKPSLDSRE 398

  Fly  2048 QSVS------------SAVNVRNL-NQDEKLY--GTMPNPIKSAQN----SYKNQPGRIENYTTG 2093
            :|.|            |.|..:|: :|||::.  |.:| |:|.:::    :..|....:.:.|:.
Zfish   399 ESDSQPFFKTALTSRPSLVKHKNVYSQDEEVVVKGPIP-PLKPSKDLLNANNHNSTALLPDLTSA 462

  Fly  2094 HSSVSEKEKKEWWDEVMDIFNGNLEQSKLSPL------YTEGNLSRA------------------ 2134
            .:.:|.           |..:.::..|...|:      |..||....                  
Zfish   463 VNVLSN-----------DYVDTSINHSPTKPVRQGGFSYMGGNTQAVTRRPTVIRVPSKTDKISA 516

  Fly  2135 ---------------LAKESGYTSDSNLVFRKKEVPVSSPLSPVEQKQAYKSL-------QAG-G 2176
                           :.|..|.|......||:....|||.:|...:....|.|       :.| |
Zfish   517 FSDSEEAVEFPPPLPVQKAVGSTPTPAKAFRQDPFNVSSDMSIPPRPSGGKVLPPRPPPAKTGPG 581

  Fly  2177 EPPL------------LGFRKPAPEKP---------RDLDPNAPPIPPQP--------------P 2206
            .||.            .||.:.||.|.         |......|.:||:|              |
Zfish   582 RPPPPQTNNSQRRPSDSGFSQIAPSKQQPSQWQQQNRRASKKGPALPPRPNPGHRLYNKYTLEVP 646

  Fly  2207 VKGLSSYDFPYSTDTVDGSDV-NIHFKTPIRHEQRQNLSEEELAIR-------------QAEHMQ 2257
             .|::.:|:       :||:. .:.|:   ::|....|  |||..|             |..|| 
Zfish   647 -HGIAEFDY-------NGSNTGELSFQ---KNEVLVLL--EELDSRTFECQAGNTKGTVQKSHM- 697

  Fly  2258 KLYHEERRRKYLQELQDMNSRRHTDNFTPSQKSPIALNRYDDFPTDVTLKSLVG--PKTVARALF 2320
                     |.:..|.|::|     |..|.:.|              :.:.:.|  ......||:
Zfish   698 ---------KIITPLTDLSS-----NSLPQKTS--------------SFRGMGGNAGSLQVEALY 734

  Fly  2321 NFQGQTSKELSFRKGDTIYIRRQIDANWYEGEHNAMIGLLPASYVEIVSRDGARTPS------KR 2379
            :|......||:.:.||.:....|:|.:||.|......|..|.:||:::|:.....|:      .:
Zfish   735 DFTPAGPGELALKAGDVVSNVEQLDDDWYMGTCRNATGFFPINYVKVLSKPNIYAPAFRNEWKNK 799

  Fly  2380 PSEGQAR-----AKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRKGIFPCSYVEVLTD 2439
            ||....|     |:::|:.:.|.|||..:.:::.|...:...|..|::....||||.::|||:.|
Zfish   800 PSPETVRGPRCVARFDFEGEQGDELSFFEDDVIQLKEYLGEEWARGEVNGHVGIFPLNFVEVIED 864

  Fly  2440 IGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQPPNGI----LKETRTLHKT 2500
            :                      |::.|.::               .||.|    :..:.|....
Zfish   865 L----------------------PSVPVQKS---------------APNKIALPGMASSSTQSSY 892

  Fly  2501 DALHVDTSSEPLAYRALYKYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYV 2565
            .|...:::....|. |||.:..:..::|...:||.:.|....||.|:.|  :..|..|.||..:|
Zfish   893 RASEAESNGAEWAV-ALYDFTAETEEDLPFQQGDRILVTAHVDDEWWSG--RINGREGFFPKAFV 954

  Fly  2566 E 2566
            |
Zfish   955 E 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404 9/48 (19%)
SH3_Sorbs_1 2315..2367 CDD:212715 16/51 (31%)
SH3_Sorbs_2 2384..2436 CDD:212716 15/56 (27%)
SH3_Sorbs_3 2514..2567 CDD:212714 17/53 (32%)
sh3d19XP_009289295.1 SH3 647..696 CDD:302595 12/60 (20%)
SH3 732..782 CDD:302595 16/49 (33%)
SH3_Eve1_3 809..859 CDD:212750 13/49 (27%)
SH3_Eve1_4 904..953 CDD:212751 16/51 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14167
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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