DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAP and Aplip1

DIOPT Version :10

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:NP_728573.1 Gene:Aplip1 / 53472 FlyBaseID:FBgn0040281 Length:490 Species:Drosophila melanogaster


Alignment Length:371 Identity:75/371 - (20%)
Similarity:123/371 - (33%) Gaps:129/371 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  2223 DGSDVNIHFKTPIRHEQRQNLSEEELAIRQAEHMQKLYHEERRRKYLQELQDMNSRRHTDNFTPS 2287
            ||||          .|....|.:.|..:||.|      .:|........|....|....|:|...
  Fly    56 DGSD----------QEDGIGLVDHEPKMRQVE------DDELGDGLKVTLSSDGSLDTNDSFNSH 104

  Fly  2288 QKSPIALNRYDDFPTDVTLKSLVGPKTVARALFNFQGQTSKELSFRKGDTIYIRRQIDANWYEGE 2352
            :..|  ||..|                   |:..|.|..:..|                    |.
  Fly   105 RHHP--LNHQD-------------------AIGGFLGMDTSGL--------------------GG 128

  Fly  2353 HNAMIGLLPASYVEIVSRDGARTPSKRPSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNW 2417
            ::|.:.:            ||.|....|:....|.:....     |:..||..  ::...:.|:.
  Fly   129 NSAPVTI------------GASTDLLAPNTAATRRRRKLP-----EIPKNKKS--SILHLLGGSN 174

  Fly  2418 FEGKIANR------KGIFP--------------CSYV---------EVLTDIGAEDIAARTTTVI 2453
            | |.:|:.      .||.|              |.|:         |.:..:|  |:.:..:|..
  Fly   175 F-GSLADEFRNGGGGGIPPAVRSGQQRSFLSLKCGYLMDEDSSPDSERMQSLG--DVDSGHSTAH 236

  Fly  2454 TSQSTTNLRPNLDVLRTNINNEFNTLTQNGAQPPNGILKETRTLHKTDALHVDTSSEPLAYRALY 2518
            :.....::.|.:.          :.::|:...||.|.:...: |...:|.|          |.|:
  Fly   237 SPNDFKSMSPQIT----------SPVSQSPFPPPFGGVPFGQ-LEMLEATH----------RGLH 280

  Fly  2519 KYRPQNSDELELLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNY 2564
            |:.|::.||:||..||.::|.::.:|.|..|.:.|||..|.||..|
  Fly   281 KFVPRHHDEIELEIGDAIYVQKEAEDLWCEGVNLRTGRQGIFPSAY 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 Sorb 1959..2003 CDD:470634
SH3_Sorbs_1 2315..2367 CDD:212715 6/51 (12%)
SH3_Sorbs_2 2384..2436 CDD:212716 13/80 (16%)
SH3_Sorbs_3 2514..2567 CDD:212714 21/51 (41%)
Aplip1NP_728573.1 SH3_JIP1_like 275..329 CDD:212735 22/62 (35%)
PTB_JIP 343..490 CDD:269923
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.