DRSC/TRiP Functional Genomics Resources

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Protein Alignment CAP and sh3rf2

DIOPT Version :9

Sequence 1:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster
Sequence 2:XP_009289332.1 Gene:sh3rf2 / 100537944 ZFINID:ZDB-GENE-141212-301 Length:769 Species:Danio rerio


Alignment Length:416 Identity:106/416 - (25%)
Similarity:161/416 - (38%) Gaps:132/416 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2234 PIRHEQRQNLSE----EELAIRQAEHMQKLYHEERRRKYLQEL--QDMNSRRHTDNFTPSQKSPI 2292
            |:.|...::|.|    .....|...:|.....|:....|.|:|  |:.|::|             
Zfish    68 PLLHRLLESLHEWGPVSTPRDRSVRYMSSPAQEDHCSSYTQDLPKQEQNTQR------------- 119

  Fly  2293 ALNRYDDFPTDVTLKSLVGPKTVARALFNFQGQTSKELSFRKGDTIYIRRQIDANWYEGEHNAMI 2357
                                 ..|:||::|||....||:.:.||.||:|.::|.|||.||.....
Zfish   120 ---------------------VQAQALYDFQGNAPGELTMKSGDIIYLRWRVDDNWYYGEGKDSR 163

  Fly  2358 GLLPASYVEIVSRDGARTPSKRPSE-GQARAKYNFQAQS----GIE--LSLNKGELVTLTRRVDG 2415
            ||:|.:.::::        |::|.. ...||.|:|.|.:    |.:  |:..||:.:||.::|:.
Zfish   164 GLVPVNVLQVL--------SEQPQPLALCRALYDFNANNLDPEGSKECLTFFKGDSITLLKQVNE 220

  Fly  2416 NWFEGKIANRKGIFP-------------------------------------C------------ 2431
            ||.|||:.::.||||                                     |            
Zfish   221 NWVEGKLGDKVGIFPLQLTEPNPAAYELLEKHKRRDSVEAQPRSSVRVNADACIHRRLTGPSQKS 285

  Fly  2432 ---SYVEVLTDIGAEDI-----------AARTTTVITSQSTTNLRPNLDVLRTNINNEFNTLTQN 2482
               |.|.:|..:....:           :|:.:...|.|..|..||.|...|.|:.....|:  |
Zfish   286 SRPSNVNLLNSLNCPPLSLSQQPPHISSSAQPSYSKTPQLATFNRPRLRSSRRNLPKRHRTM--N 348

  Fly  2483 GAQPPNGILKETRTLHKTDALHVDTSSEPLAYR--------ALYKYRPQNSDELELLEGDVVHVL 2539
            |..||    ..|..|....|..:.:.|:..|.:        |||.|.|..|:||||.:|::|.|.
Zfish   349 GESPP----AITMALINPQASPMPSESKMSATQQLSISVCAALYSYTPYRSEELELRKGEMVGVY 409

  Fly  2540 EKCDDGWFVGTSQRTGCFGTFPGNYV 2565
            .|..:||..|.|.:||..|..|.|||
Zfish   410 GKFSEGWLRGLSLKTGKVGILPTNYV 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAPNP_001369075.1 MDN1 <43..328 CDD:227596
Sorb 1959..2003 CDD:413404
SH3_Sorbs_1 2315..2367 CDD:212715 22/51 (43%)
SH3_Sorbs_2 2384..2436 CDD:212716 24/109 (22%)
SH3_Sorbs_3 2514..2567 CDD:212714 25/60 (42%)
sh3rf2XP_009289332.1 RING_Ubox 8..54 CDD:327409
SH3 122..173 CDD:327375 22/50 (44%)
SH3 183..237 CDD:327375 21/53 (40%)
SH3 384..437 CDD:327375 25/52 (48%)
SH3 710..763 CDD:327375
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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