DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12910 and galt-1

DIOPT Version :9

Sequence 1:NP_001260858.1 Gene:CG12910 / 36082 FlyBaseID:FBgn0033502 Length:466 Species:Drosophila melanogaster
Sequence 2:NP_504545.2 Gene:galt-1 / 187430 WormBaseID:WBGene00019763 Length:425 Species:Caenorhabditis elegans


Alignment Length:492 Identity:107/492 - (21%)
Similarity:180/492 - (36%) Gaps:124/492 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 LVASAMLVLVY---ISMRSSL------NE-----RLREDLAKAQRQMIFERPNPHWDYSNSWRRI 69
            :..|..:.::|   |:.|||.      ||     .:..|: |..|:::.|.|:|      |..|:
 Worm    13 IALSFCITVIYHFPIATRSSKEYDEYGNEYENVASIESDI-KNVRRLLDEVPDP------SQNRL 70

  Fly    70 GNSTL-RHEI-YSAYFDARTDIVGNVRMDDEQMTIGSLRIFAILPERLRDSSINCIV---RFSDF 129
            ....| .|.. :|||.|.|.   ||       |....:|:...:..:   .:.:|.:   :.:|.
 Worm    71 QFLKLDEHAFAFSAYTDDRN---GN-------MGYKYVRVLMFITSQ---DNFSCEINGRKSTDV 122

  Fly   130 SSQEIKAEEAGAMHDVHNNTFAAWSIMCPLHASRRSPLRLPQAVALAYASNRLSHLSPTFIQISY 194
            |..|..        :.|...:..:.:.|          :||..:..    |.:|       .:..
 Worm   123 SLYEFS--------ENHKMKWQMFILNC----------KLPDGIDF----NNVS-------SVKV 158

  Fly   195 PRNMTNMFG----RSR--------P-----TISVCVGPLHENYSNVLRLVEFVEMYRLQGATHFY 242
            .|:.|..|.    |.|        |     .:|:||..|..|..:..|:|||:|:..|||....|
 Worm   159 IRSTTKQFVDVPIRYRIQDEKIITPDEYDYKMSICVPALFGNGYDAKRIVEFIELNTLQGIEKIY 223

  Fly   243 FY--YVEASEEVLRVLEHYQRIGLADVFEWNVQAHMQDVHYAGIVAQFNDCVYRANVVDNFRYAA 305
            .|  ..|....:.:.|::|.......:.::.:......|.|.|.:|...||:.|...:.  :|..
 Worm   224 IYTNQKELDGSMKKTLKYYSDNHKITLIDYTLPFREDGVWYHGQLATVTDCLLRNTGIT--KYTF 286

  Fly   306 VVDLDEVVMP-LKHNTLADYLRQCDEGRTAGFVFRNVFFHRRDSNDTFN-----APSHVLNRLLY 364
            ..|.||..:| :|..||.:.:....|..|.|        .:|.:....|     ||..:.|.:..
 Worm   287 FNDFDEFFVPVIKSRTLFETISGLFEDPTIG--------SQRTALKYINAKIKSAPYSLKNIVSE 343

  Fly   365 TQSKVRRTLEVLPAYIRSKVVVNARAIVEMGNHQVYRAAPGYADHVVH-PTVGLLFHYRDKCINC 428
            .:.:.|.|          |.||....:.|.|.|...|........|.| .::..::||:||...|
 Worm   344 KRIETRFT----------KCVVRPEMVFEQGIHHTSRVIQDNYKTVSHGGSLLRVYHYKDKKYCC 398

  Fly   429 KMVLIVDYTARRFGSLLFDRVDNTCLEVFLNRGICDL 465
            :...::   .:|.|..|.::.|:..       |:.||
 Worm   399 EDESLL---KKRHGDQLREKFDSVV-------GLLDL 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12910NP_001260858.1 Glyco_transf_92 209..423 CDD:279961 54/222 (24%)
galt-1NP_504545.2 Glyco_tranf_GTA_type 188..393 CDD:299700 54/224 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D561250at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_109876
Panther 1 1.100 - - O PTHR21461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.880

Return to query results.
Submit another query.