DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and Vamp7

DIOPT Version :10

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_445983.1 Gene:Vamp7 / 85491 RGDID:621558 Length:220 Species:Rattus norvegicus


Alignment Length:118 Identity:31/118 - (26%)
Similarity:64/118 - (54%) Gaps:7/118 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PPNANDNYNQFGDHQIRNN--NAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQ 85
            |...|..::.....|::::  |.:..::.:|||:|||:.|||..|::.|.:|.::|..|.::.:.
  Rat    99 PYAMNSEFSSVLAAQLKHHSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTEN 163

  Fly    86 LEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLLIIVLVSV-----WPS 133
            |...:..|:..:..|.|.....|:|:..|:.|:::|.:.|::..:     |||
  Rat   164 LVDSSVTFKTTSRNLARAMCVKNVKLTAIIVVVSIVFIYIIVSPLCGGFTWPS 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 24/85 (28%)
Vamp7NP_445983.1 Longin 4..116 CDD:341428 3/16 (19%)
R-SNARE_VAMP7 124..188 CDD:277224 19/63 (30%)

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