DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and Ykt6

DIOPT Version :9

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_062635.2 Gene:Ykt6 / 56418 MGIID:1927550 Length:198 Species:Mus musculus


Alignment Length:90 Identity:26/90 - (28%)
Similarity:44/90 - (48%) Gaps:8/90 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 DFPILPPPPNANDNYNQFGDHQIRNNNAAQ-KKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSEL 79
            |:|:..|   |...|....||..:..|..: ..:.:.||::||...|:...:|.:|||.:||.:|
Mouse   109 DWPVGSP---ATIQYTGLDDHLSKYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDL 170

  Fly    80 GERADQLEQGASQFEQQAGKLKRKQ 104
            ..:::.|...:..|.:.|    |||
Mouse   171 VSKSEVLGTQSKAFYKTA----RKQ 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 18/62 (29%)
Ykt6NP_062635.2 SNC1 3..198 CDD:227472 26/90 (29%)
Longin 44..107 CDD:290490
R-SNARE_YKT6 136..195 CDD:277220 18/60 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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