DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and Vamp4

DIOPT Version :10

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_001102326.1 Gene:Vamp4 / 364033 RGDID:1309753 Length:141 Species:Rattus norvegicus


Alignment Length:99 Identity:31/99 - (31%)
Similarity:62/99 - (62%) Gaps:8/99 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QFGDHQIRNNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQ 96
            :||.   ||:     |::..|.:||||:.:|:.|:.||:||.::|.||.::::.|...|:.|..:
  Rat    45 RFGP---RND-----KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNR 101

  Fly    97 AGKLKRKQWWANMKMMIILGVIAVVLLIIVLVSV 130
            :.:|:|:.||...|:..|:.:.|.:||::::..:
  Rat   102 SKQLRRQMWWRGCKIKAIMALAAAILLLMIITQI 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 27/85 (32%)
Vamp4NP_001102326.1 R-SNARE_VAMP4 50..116 CDD:277222 23/70 (33%)

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