DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and vamp5

DIOPT Version :9

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_001243535.1 Gene:vamp5 / 325484 ZFINID:ZDB-GENE-030131-4209 Length:112 Species:Danio rerio


Alignment Length:115 Identity:42/115 - (36%)
Similarity:65/115 - (56%) Gaps:5/115 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IRNNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKR 102
            ::|.|:   :|.:.|..|:||.|||..|:.|..||..||.||..|||.|......|.:.|.|:|:
Zfish     1 MQNGNS---RLSEAQKDVEEVKGIMLDNLNKAEERSGKLKELETRADDLLVKGKAFSKTATKVKQ 62

  Fly   103 KQWWANMKMMIILGVI--AVVLLIIVLVSVWPSSSDSGSGGGNKAITQAP 150
            |:.|.|:|..:::..:  ||:|.||:.|::..|:.|:|........|:||
Zfish    63 KKRWENIKYKVVIAAVAAAVLLGIILAVALSFSNDDNGKDASTTTTTKAP 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 34/87 (39%)
vamp5NP_001243535.1 Synaptobrevin 4..92 CDD:279324 35/90 (39%)
R-SNARE_VAMP5 5..72 CDD:277225 29/69 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580157
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45701
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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