DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and vamp5

DIOPT Version :10

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_001243535.1 Gene:vamp5 / 325484 ZFINID:ZDB-GENE-030131-4209 Length:112 Species:Danio rerio


Alignment Length:115 Identity:42/115 - (36%)
Similarity:65/115 - (56%) Gaps:5/115 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IRNNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKR 102
            ::|.|:   :|.:.|..|:||.|||..|:.|..||..||.||..|||.|......|.:.|.|:|:
Zfish     1 MQNGNS---RLSEAQKDVEEVKGIMLDNLNKAEERSGKLKELETRADDLLVKGKAFSKTATKVKQ 62

  Fly   103 KQWWANMKMMIILGVI--AVVLLIIVLVSVWPSSSDSGSGGGNKAITQAP 150
            |:.|.|:|..:::..:  ||:|.||:.|::..|:.|:|........|:||
Zfish    63 KKRWENIKYKVVIAAVAAAVLLGIILAVALSFSNDDNGKDASTTTTTKAP 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 34/87 (39%)
vamp5NP_001243535.1 R-SNARE_VAMP5 5..72 CDD:277225 29/69 (42%)

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