DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and Sec22b

DIOPT Version :9

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_001020857.1 Gene:Sec22b / 310710 RGDID:1309988 Length:215 Species:Rattus norvegicus


Alignment Length:92 Identity:26/92 - (28%)
Similarity:48/92 - (52%) Gaps:7/92 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 NNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKRKQW 105
            ::.|::.|.....::.:|..||..|:|:||:|.:.||.|..:|:.|...:.::.|.|..|..:..
  Rat   128 DSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRST 192

  Fly   106 WANMKMMIILGVIAV-VLLIIVLVSVW 131
            :|.      |..:|| .:::||.|..|
  Rat   193 YAK------LAAVAVFFIMLIVYVRFW 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 25/86 (29%)
Sec22bNP_001020857.1 Longin 3..126 CDD:341428
R-SNARE_SEC22 132..195 CDD:277219 17/62 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5143
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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