DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syb and Vamp7

DIOPT Version :9

Sequence 1:NP_001137633.1 Gene:Syb / 36080 FlyBaseID:FBgn0003660 Length:152 Species:Drosophila melanogaster
Sequence 2:NP_035645.1 Gene:Vamp7 / 20955 MGIID:1096399 Length:220 Species:Mus musculus


Alignment Length:119 Identity:33/119 - (27%)
Similarity:66/119 - (55%) Gaps:9/119 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PPNANDNYNQFGDHQIRNN--NAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQ 85
            |...|..::.....|::::  |.:..|:.:|||:|||:.|||..|::.|.:|.::|..|.::.:.
Mouse    99 PYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTEN 163

  Fly    86 LEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLLIIVLVSV------WPS 133
            |...:..|:..:..|.|.....|:|:.||:.::::| .|.::||:      ||:
Mouse   164 LVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIV-FIYIIVSLLCGGFTWPN 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SybNP_001137633.1 Synaptobrevin 44..130 CDD:395764 26/85 (31%)
Vamp7NP_035645.1 Longin 29..104 CDD:316307 1/4 (25%)
R-SNARE_VAMP7 124..188 CDD:277224 20/63 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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