DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and gad2

DIOPT Version :10

Sequence 1:NP_523679.2 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001017708.2 Gene:gad2 / 550403 ZFINID:ZDB-GENE-030909-9 Length:583 Species:Danio rerio


Alignment Length:412 Identity:105/412 - (25%)
Similarity:182/412 - (44%) Gaps:49/412 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 YFPALNS---MPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQ 140
            ||..|::   |..|..|.|....|...||:..:|....||.:.:..:.::||..|        ..
Zfish   176 YFNQLSTGLDMVGLAADWLTSTANTNMFTYEVAPVFVLLEYVTLKKMREIIGWQD--------GH 232

  Fly   141 GGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAAL---I 202
            |.|:.....:.:.:..:|..|.:......|:  |....   .||||:.|:.:|.|::|.|.   |
Zfish   233 GDGIFSPGGAISNMYAMLLARYKMFPEVKEK--GMSSV---PRLVAFTSEHSHFSIKKGAAALGI 292

  Fly   203 GLVRMRYIEADDDLAMRGKLLREAIEDDI----KQGLVPFWVCATLGTTGSCSFDNLEEIGIVCA 263
            |...:..|:||:    |||::...:|..|    ::|.|||:|.||.|||...:||.|..|..:|.
Zfish   293 GTESVICIKADE----RGKMIPSDLERRIIEAKQKGYVPFFVSATAGTTVYGAFDPLIAIADICK 353

  Fly   264 EHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFN 328
            :|.:|:|||.|:.||..:..:.|..|.|:|||:|:.:||.|.:.|....:||.||:...:.....
Zfish   354 KHDVWMHVDGAWGGSLLMSRKHRWKLNGVERANSMTWNPHKMMAVPLQCSALLVREEGLMQSCNQ 418

  Fly   329 VEPLYL--QHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALV 391
            ::..||  |.::..:..|.....:...|.....|:|.:.|:.|..|.:..|.:.:.|::.....:
Zfish   419 MQACYLFQQDKHYDLQYDTGDKALQCGRHVDIFKLWLMWRAKGTIGFEAQIDKCLELSEYLYNKI 483

  Fly   392 LADHRFEL-----------------PAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSL 439
            .....:::                 |..|:|...|.|::..:::...:..|:...|.. .:....
Zfish   484 KDREGYQMVFDGKPQHTNVCFWYLPPGVRYLEDKVERMKRLHKVAPVIKARMMEYGTT-MVSYQP 547

  Fly   440 KGQYV--IRFTITSTHTTLDDI 459
            :|..|  .|..|::...|.:||
Zfish   548 QGDKVNFFRMVISNPAATFEDI 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_523679.2 Pyridoxal_deC 35..413 CDD:395219 96/362 (27%)
gad2NP_001017708.2 PHA00540 102..>156 CDD:133910
Pyridoxal_deC 136..506 CDD:395219 91/346 (26%)
TIM-like beta/alpha barrel domains 511..>561 CDD:473867 10/50 (20%)
Blue background indicates that the domain is not in the aligned region.

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