DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and gad2

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001017708.2 Gene:gad2 / 550403 ZFINID:ZDB-GENE-030909-9 Length:583 Species:Danio rerio


Alignment Length:412 Identity:105/412 - (25%)
Similarity:182/412 - (44%) Gaps:49/412 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 YFPALNS---MPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQ 140
            ||..|::   |..|..|.|....|...||:..:|....||.:.:..:.::||..|        ..
Zfish   176 YFNQLSTGLDMVGLAADWLTSTANTNMFTYEVAPVFVLLEYVTLKKMREIIGWQD--------GH 232

  Fly   141 GGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAAL---I 202
            |.|:.....:.:.:..:|..|.:......|:  |....   .||||:.|:.:|.|::|.|.   |
Zfish   233 GDGIFSPGGAISNMYAMLLARYKMFPEVKEK--GMSSV---PRLVAFTSEHSHFSIKKGAAALGI 292

  Fly   203 GLVRMRYIEADDDLAMRGKLLREAIEDDI----KQGLVPFWVCATLGTTGSCSFDNLEEIGIVCA 263
            |...:..|:||:    |||::...:|..|    ::|.|||:|.||.|||...:||.|..|..:|.
Zfish   293 GTESVICIKADE----RGKMIPSDLERRIIEAKQKGYVPFFVSATAGTTVYGAFDPLIAIADICK 353

  Fly   264 EHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFN 328
            :|.:|:|||.|:.||..:..:.|..|.|:|||:|:.:||.|.:.|....:||.||:...:.....
Zfish   354 KHDVWMHVDGAWGGSLLMSRKHRWKLNGVERANSMTWNPHKMMAVPLQCSALLVREEGLMQSCNQ 418

  Fly   329 VEPLYL--QHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALV 391
            ::..||  |.::..:..|.....:...|.....|:|.:.|:.|..|.:..|.:.:.|::.....:
Zfish   419 MQACYLFQQDKHYDLQYDTGDKALQCGRHVDIFKLWLMWRAKGTIGFEAQIDKCLELSEYLYNKI 483

  Fly   392 LADHRFEL-----------------PAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSL 439
            .....:::                 |..|:|...|.|::..:::...:..|:...|.. .:....
Zfish   484 KDREGYQMVFDGKPQHTNVCFWYLPPGVRYLEDKVERMKRLHKVAPVIKARMMEYGTT-MVSYQP 547

  Fly   440 KGQYV--IRFTITSTHTTLDDI 459
            :|..|  .|..|::...|.:||
Zfish   548 QGDKVNFFRMVISNPAATFEDI 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 96/362 (27%)
gad2NP_001017708.2 Pyridoxal_deC 136..506 CDD:278699 91/346 (26%)
TIM_phosphate_binding 511..>561 CDD:304361 10/50 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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