DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and ddc

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001011289.1 Gene:ddc / 496742 XenbaseID:XB-GENE-983285 Length:485 Species:Xenopus tropicalis


Alignment Length:476 Identity:252/476 - (52%)
Similarity:347/476 - (72%) Gaps:3/476 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVM 65
            |:..|:|:|||:||||:|||||.|..|:|||||.|||:|.|:|:|||.|||.:.:|..||||::|
 Frog     1 MNASEFRKRGKDMVDYVADYLEQIESRQVFPDVEPGYLRPLIPDSAPEEGETYEEIIKDVERVIM 65

  Fly    66 PGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPD 130
            ||:|||.||:..||||..:|.|:||.|||..||.|:||:|||||||||||.::::|||||||||:
 Frog    66 PGVTHWHSPYFFAYFPTGSSYPALLADMLCGAIGCIGFSWASSPACTELETVMLDWLGKMIGLPE 130

  Fly   131 AFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSS 195
            .|| ..::.:||||:|.|||||||:.|||.||:..:|....:|...:|||.:|:|||.|||||||
 Frog   131 QFL-AGNKGEGGGVIQGTASEATLMALLAARTKVTRRLQAENPKLTEAEIVSRMVAYSSDQAHSS 194

  Fly   196 VEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGI 260
            ||:|.||..|||:.|.:|::...||:.|::|:|:|..:||:|.:.|||||||.||:||||.|:|.
 Frog   195 VERAGLISGVRMKKIPSDENFVARGQALKKALEEDKAEGLIPIFFCATLGTTNSCAFDNLLELGP 259

  Fly   261 VCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHR 325
            ||...::|:|:|||||||||||||||..::|||.|||..|||.|||:|:||.:..||:..:.:..
 Frog   260 VCNAENIWMHIDAAYAGSAFICPEFRYLMKGIEFADSFNFNPHKWLLVNFDCSTFWVKKRSDLIG 324

  Fly   326 TFNVEPLYLQH--ENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFE 388
            .|.::|:|||:  :.||:..|:.||||||.||||:||:|||.|.||:||||.|||:.|.||.:|.
 Frog   325 AFKMDPVYLQYDQQESGLVTDYRHWQIPLGRRFRSLKLWFVFRIYGVKGLQVHIRKHVGLAHEFL 389

  Fly   389 ALVLADHRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTH 453
            ..|..|.:||:.|...||||.||::|.||:.:.||:::|:...:|.:|..|...:|:||.:.:..
 Frog   390 ECVKKDDQFEICAPVILGLVCFRLKGSNELNKALLQKINNSKKIHIVPCCLGDTFVLRFAVCART 454

  Fly   454 TTLDDIVKDWMEIRQVASTVL 474
            .....|...|..|:::.:.:|
 Frog   455 VESSHIQFAWKHIKELTTELL 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 214/379 (56%)
ddcNP_001011289.1 Pyridoxal_deC 35..414 CDD:365998 214/379 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 52 1.000 Domainoid score I11354
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X696
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.010

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