DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and ddc

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_998507.1 Gene:ddc / 406651 ZFINID:ZDB-GENE-040426-2656 Length:480 Species:Danio rerio


Alignment Length:479 Identity:251/479 - (52%)
Similarity:351/479 - (73%) Gaps:3/479 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVM 65
            ||..|:|:||:|||||:|||:|||.:|:|:|||.|||:|.|:||.||.|.|.:..:..|:||::|
Zfish     1 MDAAEFRRRGREMVDYVADYIENIEKRQVYPDVEPGYLRSLIPEEAPEEPESYEDVVKDIERVIM 65

  Fly    66 PGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPD 130
            ||:|||.||:.:||||..:|.|::|.|:|..||.|:||:||:||||||||.::::|||||:.||:
Zfish    66 PGVTHWHSPYFYAYFPTAHSYPAMLADILCGAIGCIGFSWAASPACTELETVMLDWLGKMLKLPE 130

  Fly   131 AFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSS 195
            .|| ..::.:||||:|:|||||||:.|||.|::.::.....||...:.:|.::||||.|||||||
Zfish   131 DFL-AGTKGKGGGVIQSTASEATLITLLAARSKIVRLIQADHPDRSETDIISKLVAYSSDQAHSS 194

  Fly   196 VEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGI 260
            ||:|.|||.|||:.|..|...::||..|...:::|...||:||:.|||||||.||:||.:.|:|.
Zfish   195 VERAGLIGGVRMKKIPTDSKFSVRGDALERILKEDKAAGLIPFFFCATLGTTASCAFDCITELGP 259

  Fly   261 VCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHR 325
            :|....:|:|:|||||||||||||||..|.|||.|||..|||.|||:::||.:|:||:....:..
Zfish   260 ICNAEKMWMHIDAAYAGSAFICPEFRPLLNGIEFADSFNFNPHKWLLINFDCSAMWVKKRADIIG 324

  Fly   326 TFNVEPLYLQHEN--SGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFE 388
            .|.:|||||:|::  ||:..|:.||||||.||||:||:|||.|.||:|.||.:||:.|.||::||
Zfish   325 AFKMEPLYLKHDHQESGLVTDYRHWQIPLGRRFRSLKMWFVFRMYGLKALQAYIRKHVGLAKEFE 389

  Fly   389 ALVLADHRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTH 453
            |.|.||.|||:.|...:|||.||::|.||::|.||||:|....:|.:|..|.|.:|:||.:.:..
Zfish   390 AFVRADQRFEISADVVMGLVCFRLKGPNELSENLLKRINSARKIHLVPCHLAGLFVLRFAVCARA 454

  Fly   454 TTLDDIVKDWMEIRQVASTVLEEM 477
            |....:.:.|..|||:||.:|:|:
Zfish   455 TESRHVQEAWCHIRQLASELLQEL 478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 204/379 (54%)
ddcNP_998507.1 AAT_I 1..478 CDD:302748 250/477 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 55 1.000 Domainoid score I11180
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100572
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X696
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.730

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