DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and CG5618

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_649211.1 Gene:CG5618 / 40241 FlyBaseID:FBgn0036975 Length:510 Species:Drosophila melanogaster


Alignment Length:583 Identity:130/583 - (22%)
Similarity:221/583 - (37%) Gaps:177/583 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GKEMVDYIAD-------YLENI-----------------RERRVFPDVSPGYMRQLL------PE 44
            |.|.||.|.|       .|||:                 .::::.|.:.|..:::|:      .|
  Fly     7 GAETVDQIRDGLMDDWKILENVFHLLRKEDTFCVDPQKWDKQKIVPFLQPDKLKELINLKVRETE 71

  Fly    45 SAPIEGEPWPKIFSDVERIVMPGITHWQSPHMHAYFPALNSM-----P-SLLGDMLADAINCLGF 103
            :..:         :::|.:... :.|:.....|..|.  |.:     | .|.|.::.:|:|...:
  Fly    72 NCSL---------AEIEELCQQ-VIHYSVKTSHGRFH--NQLFGQLDPFGLAGALVTEAMNGSTY 124

  Fly   104 TWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRF 168
            |:..:|..:.:|..|:..:.|:.|          ..:|.|:.....|.:.:..::..|       
  Fly   125 TYEVAPVFSLIETEVIATICKLAG----------YKEGDGIFAPGGSTSNMYGMVLAR------- 172

  Fly   169 HERHPGYQDA-EINAR-------LVAYCSDQAHSSVEKAA-LIGL-----VRMRYIEADDDLAMR 219
                  |:.| |:...       ||.:.||::|.|..||| .:||     |.:|..|       |
  Fly   173 ------YKIAPEVKTSGMFGMRPLVLFTSDESHYSFVKAANWLGLGSYNCVSVRTNE-------R 224

  Fly   220 GKLLREAIEDDIKQ----GLVPFWVCATLGTTGSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAF 280
            |::|.:.:|..|.:    |..||:|..|.|||...:||::.....|...|.|||||||...|:|.
  Fly   225 GQMLLDDLEAKIAEAKARGGEPFFVNCTAGTTVLGAFDDINGAADVTERHGLWLHVDACLGGAAL 289

  Fly   281 ICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRD---------STAVHRTFNVEPLYLQH 336
            :..:.|:.:.|:|||:|.::||.|.:......:....|:         ||..|..|..:..|   
  Fly   290 LSAKNRSLIAGLERANSFSWNPHKTIGAPLQCSLFLTRESGRLLERCNSTEAHYLFQQDKFY--- 351

  Fly   337 ENSGVAVDFMHWQIPLSRRFRALKVWFVL--RSYGIKGLQRHIREGVRLAQKFEALVLADHRFEL 399
               .|:.|..:..:...|:..|.|.|.:|  |.||..||.  :...:.:|:..|..:        
  Fly   352 ---DVSYDTGNKSVQCGRKIDAFKFWLMLKARGYGKYGLM--VDHAIHIARLLEGKL-------- 403

  Fly   400 PAKRHLGLVVFRIRGDNEITEKLLKRL---NHRGNLHC---IPSSLKGQYVIRFTITSTHTTLDD 458
                       |.|||.       .||   .|..:..|   ||.:::        ::|...|   
  Fly   404 -----------RQRGDR-------FRLVIPEHEYSNVCFWFIPKAMR--------VSSEEET--- 439

  Fly   459 IVKDWMEIRQVASTVLEEMNITISNRVYLKETKEKNEAFGSSLLLSNSPLSPKVVNGSFAAIF 521
             .:.|..:..||..:.|:|                  |...:|::..|||..|.:...|..:|
  Fly   440 -PEWWSRLYTVAPKIKEQM------------------AHSGTLMIGYSPLKAKNLGNFFRMVF 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 96/418 (23%)
CG5618NP_649211.1 AAT_I 97..504 CDD:302748 114/483 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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