DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and Gad1

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster


Alignment Length:510 Identity:120/510 - (23%)
Similarity:210/510 - (41%) Gaps:86/510 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EYRQRGKEMVDYIADYLE--NIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVMPG 67
            |.|:...:::|.:.|:::  |.|..:|.....|..|::||....|....|..::..|....:...
  Fly    32 ETREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQ 96

  Fly    68 ITHWQSPHMHAYFPALNSMP--SLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPD 130
            :   ::.|.|.:....|.:.  |:.|:.|....|...||:..:|....:|.:|:..:.::||   
  Fly    97 V---KTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREIIG--- 155

  Fly   131 AFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQD---AEINARLVAYCSDQA 192
                   .|.|..:|....|.:.|...||.|       |:..|.|::   ..:...||.:.|||.
  Fly   156 -------WSGGDSILAPGGSISNLYAFLAAR-------HKMFPNYKEHGSVGLPGTLVMFTSDQC 206

  Fly   193 HSSVEK-AALIGLVRMRYIEADDDLAMRGKLLREAIEDDI----KQGLVPFWVCATLGTTGSCSF 252
            |.|::. ||:.||.....|....|  ..||::...:|..|    .:|.:||:|.||.|||...:|
  Fly   207 HYSIKSCAAVCGLGTDHCIVVPSD--EHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAF 269

  Fly   253 DNLEEIGIVCAEHHLWLHVDAAYAGSAFIC-----PEFRTWLRGIERADSIAFNPSKWL------ 306
            |::..|..:|.:::.|:|:|||:.|...:.     |.|    .|:|||||:.:||.|.:      
  Fly   270 DDINTIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRF----TGVERADSVTWNPHKLMGALLQC 330

  Fly   307 -MVHFDATALWVRDSTAVHRTFNVEPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGI 370
             .:||....|.:..:     ..:.|.|::..:...::.|.....|...|.....|:|...|:.|.
  Fly   331 STIHFKEDGLLISCN-----QMSAEYLFMTDKQYDISYDTGDKVIQCGRHNDIFKLWLQWRAKGT 390

  Fly   371 KGLQRHIREGVRLAQ-KFEALVLADHRFELPAKRHLGLVVF-----RIRGDNEITEK-------- 421
            :|.::.....:.|.| :.:.:.....||.|..:.....|.|     |:||.....:|        
  Fly   391 EGFEQQQDRLMELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELGKIC 455

  Fly   422 -LLK-RLNHRGNL---------------HCIPSSLKGQYVIRFTITSTHTTLDDI 459
             ::| |:..:|.|               ..|.|:...:..:.|.:...|...||:
  Fly   456 PIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 100/405 (25%)
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 99/400 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445341
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.740

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