DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hdc and gad1b

DIOPT Version :10

Sequence 1:NP_523679.2 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_919400.1 Gene:gad1b / 378441 ZFINID:ZDB-GENE-030909-3 Length:587 Species:Danio rerio


Alignment Length:403 Identity:103/403 - (25%)
Similarity:183/403 - (45%) Gaps:62/403 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EMVDYIADYLENI--RERRVFPDVSP--------GYMRQLLPESAPIEGEPWPKIFSDVERIVMP 66
            |:|:.:.:|:...  |..:|.....|        |:..:|..:...:|     :|..|....:..
Zfish   112 EVVEILTNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDQPESLE-----QILVDCRDTLKY 171

  Fly    67 GITHWQSPHMHAYFPALNS---MPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGL 128
            |:   ::.|.. :|..|:|   :..|.|:.|....|...||:..:|....:|.:.:..:.::||.
Zfish   172 GV---RTGHPR-FFNQLSSGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQLTLKKMREIIGW 232

  Fly   129 P----DAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINA--RLVAY 187
            |    ||..     |.||.:       :.:..::..|       ::..|..:...::|  |||.:
Zfish   233 PNGDGDALF-----SPGGAI-------SNMYSVMVAR-------YKYFPEVKTKGMSAAPRLVLF 278

  Fly   188 CSDQAHSSVEKA-ALIGLVRMRYIEADDDLAMRGKLLREAIED---DIKQ-GLVPFWVCATLGTT 247
            .|:.:|.|::|| |::|..:...|....|  .||:::...:|.   |.|| |.||.:|.||.|||
Zfish   279 TSEHSHYSIKKAGAVLGFGKENVILLKTD--ERGRVIPADLEAKVIDAKQKGYVPLFVNATAGTT 341

  Fly   248 GSCSFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDA 312
            ...:||.:.:|..:|.:::||||||.|:.|...:..:.|..|.|||||:|:.:||.|.:.|....
Zfish   342 VYGAFDPINDIADICEKYNLWLHVDGAWGGGLLMSRKHRHKLSGIERANSVTWNPHKMMGVPLQC 406

  Fly   313 TALWVRDSTAVHRTFNVEPLYL-----QHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKG 372
            :|:.||:...:....::...||     |::   |..|.....|...|.....|.|.:.::.|..|
Zfish   407 SAILVREKGILQGCNSMCAGYLFQPDKQYD---VTYDTGDKAIQCGRHVDIFKFWLMWKAKGTIG 468

  Fly   373 LQRHIREGVRLAQ 385
            .::||...:.|::
Zfish   469 FEQHIDRCLELSE 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_523679.2 Pyridoxal_deC 35..413 CDD:395219 98/378 (26%)
gad1bNP_919400.1 Pyridoxal_deC 137..511 CDD:395219 98/378 (26%)

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