DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hdc and Tdc1

DIOPT Version :9

Sequence 1:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster
Sequence 2:NP_610226.2 Gene:Tdc1 / 35573 FlyBaseID:FBgn0259977 Length:587 Species:Drosophila melanogaster


Alignment Length:511 Identity:248/511 - (48%)
Similarity:331/511 - (64%) Gaps:12/511 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVERIVM 65
            ||.:|:|:.|||::|||..|..||.||.|.|.:.|||:::|||..||...||:..:..|.|:.:|
  Fly     1 MDVEEFRKYGKEVIDYICQYGTNIEERDVAPTLDPGYLKKLLPADAPQSPEPFKDVLEDFEQKIM 65

  Fly    66 PGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPD 130
            ||:.||..|...||||:.||.||:|||||:.||..:||:|||.||..|||.|||||..|.:|||.
  Fly    66 PGVVHWNHPKFFAYFPSGNSFPSVLGDMLSSAIGSIGFSWASCPAAAELETIVMNWYAKALGLPK 130

  Fly   131 AFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSS 195
            ||:..:..|.|||.||.:|||..||.|:..|.|||... :......|:.....|:||.|.:||||
  Fly   131 AFVSDAPGSTGGGALQGSASECVLVSLITARARAISEL-KGQTSVHDSVFLPSLIAYASREAHSS 194

  Fly   196 VEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSCSFDNLEEIGI 260
            ||||..:.||::|.|:||:...||..|||:||::|:..||.||:|.||:||||.|:||::.|||.
  Fly   195 VEKATKMALVKLRIIDADEHGRMRVDLLRQAIQNDVNAGLTPFFVVATVGTTGGCAFDDITEIGK 259

  Fly   261 VCAE-HHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVH 324
            ||.: ..:|||||.||||::||.||.|.:..|:|.|||...||:|.|:.:|||:||||||...:.
  Fly   260 VCRQVSSIWLHVDGAYAGNSFILPEMRVFSAGLEYADSFNTNPNKLLLTNFDASALWVRDVMNLK 324

  Fly   325 RTFNVEPLYLQHENSGVAVDFMHWQIPLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEA 389
            ...||.||||:||:. ..||:.|:.|||||||||||:|||.|:|||:|||.:||..:.||:|||.
  Fly   325 SALNVNPLYLRHEHL-TGVDYRHYGIPLSRRFRALKLWFVFRTYGIRGLQEYIRNHMALAKKFEM 388

  Fly   390 LVLADHRFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTITSTHT 454
            ||..|.|||:....|||||.||:|..:|....||.::||.|.:|..|:...|:|||||.:|..|.
  Fly   389 LVRKDERFEVRNDVHLGLVCFRMRTGDEPNHMLLAQINHSGKMHMTPAKFNGRYVIRFCVTYEHA 453

  Fly   455 TLDDIVKDWMEIRQVASTVLEEMNITISNRVYLKETKEKNEAFGSSLLLSNSPLSP 510
            |..||::.|.:|:..|..:|.:..:..|:.....|..|:.         |:.||:|
  Fly   454 TEKDILEAWTQIKCFAEEILRDHQLESSSVPTTPEGSERT---------SSEPLAP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 200/378 (53%)
Tdc1NP_610226.2 Pyridoxal_deC 35..412 CDD:278699 200/378 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 368 1.000 Domainoid score I180
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 417 1.000 Inparanoid score I444
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 1 1.000 - - mtm1068
orthoMCL 1 0.900 - - OOG6_100572
Panther 1 1.100 - - P PTHR11999
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X696
109.870

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